Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1BO60663 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1BO60663 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
LMX1BO60663 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
LMX1BO60663 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
LMX1BO60663 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
LMX1BO60663 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
LMX1BO60663 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.56■□□□□ 0.08
LMX1BO60663 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 CROCCP2-202ENST00000412962 2773 ntBASIC15.56■□□□□ 0.08
LMX1BO60663 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC15.56■□□□□ 0.08
LMX1BO60663 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC15.56■□□□□ 0.08
LMX1BO60663 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.56■□□□□ 0.08
LMX1BO60663 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.56■□□□□ 0.08
LMX1BO60663 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
LMX1BO60663 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC15.56■□□□□ 0.08
LMX1BO60663 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LMX1BO60663 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
LMX1BO60663 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.56■□□□□ 0.08
LMX1BO60663 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LMX1BO60663 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LMX1BO60663 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LMX1BO60663 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
LMX1BO60663 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.55■□□□□ 0.08
LMX1BO60663 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LMX1BO60663 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.55■□□□□ 0.08
LMX1BO60663 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC15.55■□□□□ 0.08
LMX1BO60663 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LMX1BO60663 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.55■□□□□ 0.08
LMX1BO60663 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.55■□□□□ 0.08
LMX1BO60663 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 AL023806.1-201ENST00000603994 1649 ntBASIC15.55■□□□□ 0.08
LMX1BO60663 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC15.55■□□□□ 0.08
LMX1BO60663 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.55■□□□□ 0.08
LMX1BO60663 AC246785.2-201ENST00000432512 513 ntBASIC15.55■□□□□ 0.08
LMX1BO60663 AC092597.1-201ENST00000487352 616 ntBASIC15.55■□□□□ 0.08
LMX1BO60663 AC011498.5-201ENST00000592027 486 ntBASIC15.55■□□□□ 0.08
LMX1BO60663 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
LMX1BO60663 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 AP001094.4-201ENST00000579008 2176 ntBASIC15.55■□□□□ 0.08
LMX1BO60663 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.55■□□□□ 0.08
LMX1BO60663 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LMX1BO60663 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.54■□□□□ 0.08
LMX1BO60663 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.54■□□□□ 0.08
LMX1BO60663 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1BO60663 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LMX1BO60663 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.54■□□□□ 0.08
LMX1BO60663 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.54■□□□□ 0.08
LMX1BO60663 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms