Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLDN3O15551 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CLDN3O15551 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CLDN3O15551 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.32■□□□□ 0.68
CLDN3O15551 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
CLDN3O15551 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
CLDN3O15551 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 AC103564.2-201ENST00000432853 1299 ntBASIC19.32■□□□□ 0.68
CLDN3O15551 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.32■□□□□ 0.68
CLDN3O15551 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.32■□□□□ 0.68
CLDN3O15551 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CLDN3O15551 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
CLDN3O15551 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CLDN3O15551 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.32■□□□□ 0.68
CLDN3O15551 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN3O15551 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.31■□□□□ 0.68
CLDN3O15551 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.31■□□□□ 0.68
CLDN3O15551 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.31■□□□□ 0.68
CLDN3O15551 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CLDN3O15551 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.31■□□□□ 0.68
CLDN3O15551 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.31■□□□□ 0.68
CLDN3O15551 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.31■□□□□ 0.68
CLDN3O15551 SAPCD2P3-201ENST00000455031 850 ntBASIC19.31■□□□□ 0.68
CLDN3O15551 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.31■□□□□ 0.68
CLDN3O15551 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.31■□□□□ 0.68
CLDN3O15551 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CLDN3O15551 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.31■□□□□ 0.68
CLDN3O15551 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.31■□□□□ 0.68
CLDN3O15551 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
CLDN3O15551 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.31■□□□□ 0.68
CLDN3O15551 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.31■□□□□ 0.68
CLDN3O15551 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN3O15551 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.3■□□□□ 0.68
CLDN3O15551 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.3■□□□□ 0.68
CLDN3O15551 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.3■□□□□ 0.68
CLDN3O15551 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.3■□□□□ 0.68
CLDN3O15551 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.3■□□□□ 0.68
CLDN3O15551 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 ABCD1P5-201ENST00000445663 754 ntBASIC19.3■□□□□ 0.68
CLDN3O15551 FAAHP1-202ENST00000446499 1238 ntBASIC19.3■□□□□ 0.68
CLDN3O15551 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.3■□□□□ 0.68
CLDN3O15551 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.3■□□□□ 0.68
CLDN3O15551 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CLDN3O15551 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.3■□□□□ 0.68
CLDN3O15551 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.3■□□□□ 0.68
CLDN3O15551 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.3■□□□□ 0.68
CLDN3O15551 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
CLDN3O15551 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN3O15551 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN3O15551 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN3O15551 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CLDN3O15551 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms