Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HMGN4O00479 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.44■□□□□ 0.22
HMGN4O00479 AL671277.2-201ENST00000458060 996 ntBASIC16.44■□□□□ 0.22
HMGN4O00479 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.44■□□□□ 0.22
HMGN4O00479 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGN4O00479 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HMGN4O00479 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGN4O00479 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGN4O00479 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGN4O00479 AD000864.1-201ENST00000624076 2295 ntBASIC16.44■□□□□ 0.22
HMGN4O00479 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGN4O00479 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.44■□□□□ 0.22
HMGN4O00479 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.44■□□□□ 0.22
HMGN4O00479 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGN4O00479 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HMGN4O00479 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HMGN4O00479 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 AL645929.1-201ENST00000420084 975 ntBASIC16.43■□□□□ 0.22
HMGN4O00479 DUX4L26-201ENST00000489078 1255 ntBASIC16.43■□□□□ 0.22
HMGN4O00479 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGN4O00479 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGN4O00479 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGN4O00479 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGN4O00479 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HMGN4O00479 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HMGN4O00479 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGN4O00479 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HMGN4O00479 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HMGN4O00479 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGN4O00479 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGN4O00479 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGN4O00479 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 AC016396.2-201ENST00000562575 1417 ntBASIC16.42■□□□□ 0.22
HMGN4O00479 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGN4O00479 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGN4O00479 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.42■□□□□ 0.22
HMGN4O00479 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGN4O00479 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGN4O00479 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGN4O00479 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGN4O00479 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
HMGN4O00479 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms