Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 AC122714.2-201ENST00000502787 707 ntBASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 RIN3-211ENST00000557762 517 ntTSL 3 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 AL035252.4-201ENST00000624174 288 ntBASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 FLYWCH1P1-201ENST00000460917 1874 ntBASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 MAL2-202ENST00000531508 892 ntTSL 3 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 CCND1-203ENST00000536559 553 ntTSL 3 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 REXO1L9P-201ENST00000604264 2108 ntBASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC33.4■■■□□ 2.94
SHROOM4Q9ULL8 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 AF228730.6-201ENST00000641497 218 ntBASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 AC084121.3-201ENST00000641716 218 ntBASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 AC105233.6-201ENST00000642093 218 ntBASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC33.39■■■□□ 2.94
SHROOM4Q9ULL8 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.93
SHROOM4Q9ULL8 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 AC092474.2-201ENST00000424288 719 ntBASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC33.38■■■□□ 2.93
SHROOM4Q9ULL8 ADH5P3-201ENST00000433842 1137 ntBASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 AC087641.1-201ENST00000557561 1021 ntBASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 DUTP2-201ENST00000519164 463 ntBASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 CD63-210ENST00000550776 870 ntTSL 5 BASIC33.37■■■□□ 2.93
SHROOM4Q9ULL8 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 CD99-202ENST00000381180 530 ntTSL 2 BASIC33.36■■■□□ 2.93
SHROOM4Q9ULL8 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC33.36■■■□□ 2.93
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms