Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PIF1Q9H611 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PIF1Q9H611 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PIF1Q9H611 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.94■□□□□ 0.3
PIF1Q9H611 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.94■□□□□ 0.3
PIF1Q9H611 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.94■□□□□ 0.3
PIF1Q9H611 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.94■□□□□ 0.3
PIF1Q9H611 FITM1-202ENST00000559294 800 ntBASIC16.94■□□□□ 0.3
PIF1Q9H611 AL353719.1-201ENST00000566847 864 ntBASIC16.94■□□□□ 0.3
PIF1Q9H611 WWOX-216ENST00000569818 525 ntBASIC16.94■□□□□ 0.3
PIF1Q9H611 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.94■□□□□ 0.3
PIF1Q9H611 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PIF1Q9H611 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.94■□□□□ 0.3
PIF1Q9H611 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.94■□□□□ 0.3
PIF1Q9H611 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PIF1Q9H611 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.93■□□□□ 0.3
PIF1Q9H611 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.93■□□□□ 0.3
PIF1Q9H611 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
PIF1Q9H611 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.93■□□□□ 0.3
PIF1Q9H611 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.93■□□□□ 0.3
PIF1Q9H611 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 TSPY17P-201ENST00000450329 467 ntBASIC16.93■□□□□ 0.3
PIF1Q9H611 DUTP2-201ENST00000519164 463 ntBASIC16.93■□□□□ 0.3
PIF1Q9H611 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.93■□□□□ 0.3
PIF1Q9H611 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
PIF1Q9H611 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.93■□□□□ 0.3
PIF1Q9H611 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
PIF1Q9H611 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PIF1Q9H611 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.92■□□□□ 0.3
PIF1Q9H611 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.92■□□□□ 0.3
PIF1Q9H611 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
PIF1Q9H611 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.92■□□□□ 0.3
PIF1Q9H611 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.92■□□□□ 0.3
PIF1Q9H611 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 AL596275.1-201ENST00000423464 877 ntBASIC16.92■□□□□ 0.3
PIF1Q9H611 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.92■□□□□ 0.3
PIF1Q9H611 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.92■□□□□ 0.3
PIF1Q9H611 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.92■□□□□ 0.3
PIF1Q9H611 AC010240.3-201ENST00000607688 395 ntBASIC16.92■□□□□ 0.3
PIF1Q9H611 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 LINC00304-203ENST00000565008 1864 ntBASIC16.92■□□□□ 0.3
PIF1Q9H611 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PIF1Q9H611 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.92■□□□□ 0.3
PIF1Q9H611 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
PIF1Q9H611 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PIF1Q9H611 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.91■□□□□ 0.3
PIF1Q9H611 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PIF1Q9H611 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms