Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC42Q96M95 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CCDC42Q96M95 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC42Q96M95 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 CROCCP1-201ENST00000426910 5675 ntBASIC19.1■□□□□ 0.65
CCDC42Q96M95 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC42Q96M95 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC42Q96M95 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 KRT8P47-201ENST00000604727 1398 ntBASIC19.09■□□□□ 0.65
CCDC42Q96M95 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 AC024563.2-201ENST00000603282 481 ntBASIC19.09■□□□□ 0.65
CCDC42Q96M95 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 AP006294.2-201ENST00000641667 209 ntBASIC19.09■□□□□ 0.65
CCDC42Q96M95 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC42Q96M95 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC42Q96M95 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
CCDC42Q96M95 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.08■□□□□ 0.65
CCDC42Q96M95 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC42Q96M95 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.08■□□□□ 0.65
CCDC42Q96M95 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
CCDC42Q96M95 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC42Q96M95 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC42Q96M95 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC42Q96M95 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CCDC42Q96M95 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms