Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SIRT6-209ENST00000599365 1372 ntTSL 1 (best)24.65■■□□□ 1.545e-7■■□□□ 12.5
UPF1Q92900 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC23.47■■□□□ 1.355e-7■■□□□ 12.5
UPF1Q92900 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC22.85■■□□□ 1.255e-7■■□□□ 12.5
UPF1Q92900 SIRT6-212ENST00000600938 1473 ntTSL 222.79■■□□□ 1.245e-7■■□□□ 12.5
UPF1Q92900 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC22.38■■□□□ 1.175e-7■■□□□ 12.5
UPF1Q92900 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.925e-7■■□□□ 12.5
UPF1Q92900 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.792e-11■■□□□ 12.4
UPF1Q92900 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC24.5■■□□□ 1.512e-11■■□□□ 12.4
UPF1Q92900 PDIA6-208ENST00000617249 2344 ntTSL 5 BASIC12.55□□□□□ -0.42e-11■■□□□ 12.4
UPF1Q92900 PDIA6-202ENST00000381611 2534 ntTSL 2 BASIC10.78□□□□□ -0.682e-11■■□□□ 12.4
UPF1Q92900 PDIA6-203ENST00000404371 2682 ntTSL 2 BASIC10.75□□□□□ -0.692e-11■■□□□ 12.4
UPF1Q92900 SLC7A8-201ENST00000316902 4216 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.54e-7■■□□□ 12.4
UPF1Q92900 SLC7A8-203ENST00000397310 2719 ntTSL 211.62□□□□□ -0.554e-7■■□□□ 12.4
UPF1Q92900 SLC7A8-204ENST00000422941 3018 ntTSL 2 BASIC11.27□□□□□ -0.614e-7■■□□□ 12.4
UPF1Q92900 SLC7A8-206ENST00000469263 3557 ntTSL 1 (best) BASIC10.52□□□□□ -0.724e-7■■□□□ 12.4
UPF1Q92900 SLC7A8-202ENST00000339733 3066 ntTSL 1 (best)9.2□□□□□ -0.944e-7■■□□□ 12.4
UPF1Q92900 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.093e-7■■□□□ 12.4
UPF1Q92900 SEPT5-207ENST00000431044 3173 ntTSL 1 (best)15.85■□□□□ 0.134e-7■■□□□ 12.4
UPF1Q92900 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.051e-14■■□□□ 12.4
UPF1Q92900 RPA2-204ENST00000419958 554 ntTSL 39.04□□□□□ -0.961e-14■■□□□ 12.4
UPF1Q92900 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC32.29■■■□□ 2.761e-6■■□□□ 12.4
UPF1Q92900 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.231e-6■■□□□ 12.4
UPF1Q92900 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC29.01■■■□□ 2.231e-6■■□□□ 12.4
UPF1Q92900 FAM98C-207ENST00000589027 670 ntTSL 224.97■■□□□ 1.591e-6■■□□□ 12.4
UPF1Q92900 FAM98C-206ENST00000588348 2530 ntTSL 221.26■□□□□ 0.991e-6■■□□□ 12.4
UPF1Q92900 FAM98C-204ENST00000586372 4133 ntTSL 215.15■□□□□ 0.021e-6■■□□□ 12.4
UPF1Q92900 COLGALT2-202ENST00000367520 2325 ntTSL 2 BASIC9.96□□□□□ -0.811e-6■■□□□ 12.4
UPF1Q92900 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC27.82■■■□□ 2.041e-8■■□□□ 12.4
UPF1Q92900 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC27.26■■□□□ 1.951e-8■■□□□ 12.4
UPF1Q92900 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.911e-8■■□□□ 12.4
UPF1Q92900 CERS4-214ENST00000595722 1826 ntTSL 1 (best)25.09■■□□□ 1.611e-8■■□□□ 12.4
UPF1Q92900 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.521e-8■■□□□ 12.4
UPF1Q92900 CERS4-215ENST00000599275 710 ntTSL 224.14■■□□□ 1.451e-8■■□□□ 12.4
UPF1Q92900 CERS4-202ENST00000557925 2401 ntTSL 515.61■□□□□ 0.091e-8■■□□□ 12.4
UPF1Q92900 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.443e-6■■□□□ 12.4
UPF1Q92900 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.335e-6■■□□□ 12.4
UPF1Q92900 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.061e-7■■□□□ 12.4
UPF1Q92900 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.281e-7■■□□□ 12.4
UPF1Q92900 IGF2BP2-204ENST00000457616 3426 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.34e-8■■□□□ 12.4
UPF1Q92900 IGF2BP2-201ENST00000346192 3291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.364e-8■■□□□ 12.4
UPF1Q92900 MAP1LC3B-208ENST00000570189 1259 ntTSL 1 (best)24.67■■□□□ 1.543e-8■■□□□ 12.4
UPF1Q92900 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.363e-6■■□□□ 12.3
UPF1Q92900 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC24.3■■□□□ 1.483e-16■■□□□ 12.3
UPF1Q92900 METTL2A-204ENST00000616852 3150 ntTSL 2 BASIC10.44□□□□□ -0.741e-6■■□□□ 12.3
UPF1Q92900 FAM219B-203ENST00000563069 1552 ntTSL 229.33■■■□□ 2.298e-8■■□□□ 12.3
UPF1Q92900 PI4KB-207ENST00000446339 566 ntTSL 324.08■■□□□ 1.458e-8■■□□□ 12.3
UPF1Q92900 PI4KB-208ENST00000455060 934 ntTSL 221.67■■□□□ 1.068e-8■■□□□ 12.3
UPF1Q92900 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.41■□□□□ 0.548e-8■■□□□ 12.3
UPF1Q92900 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.248e-8■■□□□ 12.3
UPF1Q92900 MECP2-224ENST00000637917 159 ntTSL 512.57□□□□□ -0.48e-8■■□□□ 12.3
UPF1Q92900 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.561e-12■■□□□ 12.3
UPF1Q92900 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC30.56■■■□□ 2.482e-7■■□□□ 12.3
UPF1Q92900 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.532e-7■■□□□ 12.3
UPF1Q92900 RALY-209ENST00000489384 227 ntTSL 38.94□□□□□ -0.982e-7■■□□□ 12.3
UPF1Q92900 DEF8-212ENST00000563805 992 ntTSL 322.96■■□□□ 1.274e-6■■□□□ 12.3
UPF1Q92900 DEF8-214ENST00000564379 2354 ntTSL 222.63■■□□□ 1.214e-6■■□□□ 12.3
UPF1Q92900 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.75■■□□□ 1.074e-6■■□□□ 12.3
UPF1Q92900 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.094e-6■■□□□ 12.3
UPF1Q92900 DEF8-229ENST00000617948 3883 ntAPPRIS P4 TSL 5 BASIC12.66□□□□□ -0.384e-6■■□□□ 12.3
UPF1Q92900 DEF8-227ENST00000570182 3549 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.534e-6■■□□□ 12.3
UPF1Q92900 DEF8-201ENST00000268676 3725 ntTSL 2 BASIC11.33□□□□□ -0.64e-6■■□□□ 12.3
UPF1Q92900 RBM3-201ENST00000354480 1884 ntTSL 2 BASIC14.61□□□□□ -0.071e-11■■□□□ 12.3
UPF1Q92900 MOB3A-208ENST00000592143 558 ntTSL 423.38■■□□□ 1.338e-11■■□□□ 12.3
UPF1Q92900 ESPN-209ENST00000477679 885 ntTSL 220.72■□□□□ 0.918e-11■■□□□ 12.3
UPF1Q92900 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC41.07■■■■■ 4.172e-7■■□□□ 12.3
UPF1Q92900 PTP4A3-205ENST00000523147 558 ntTSL 529.98■■■□□ 2.392e-6■■□□□ 12.3
UPF1Q92900 DBNDD1-205ENST00000568662 563 ntTSL 222.92■■□□□ 1.262e-6■■□□□ 12.3
UPF1Q92900 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC22.18■■□□□ 1.142e-6■■□□□ 12.3
UPF1Q92900 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.95■□□□□ 0.32e-6■■□□□ 12.3
UPF1Q92900 ARHGAP27-211ENST00000531735 4754 ntTSL 515.26■□□□□ 0.032e-6■■□□□ 12.3
UPF1Q92900 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.142e-6■■□□□ 12.3
UPF1Q92900 ARHGAP27-212ENST00000532038 3694 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.422e-6■■□□□ 12.3
UPF1Q92900 ARHGAP27-202ENST00000376922 3628 ntTSL 2 BASIC12.03□□□□□ -0.482e-6■■□□□ 12.3
UPF1Q92900 LGMN-213ENST00000556790 352 ntTSL 29.22□□□□□ -0.932e-6■■□□□ 12.3
UPF1Q92900 ORAOV1-212ENST00000542470 838 ntTSL 224.11■■□□□ 1.451e-7■■□□□ 12.3
UPF1Q92900 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC21.13■□□□□ 0.971e-7■■□□□ 12.3
UPF1Q92900 ORAOV1-207ENST00000537272 988 ntTSL 320.43■□□□□ 0.861e-7■■□□□ 12.3
UPF1Q92900 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC19.53■□□□□ 0.721e-7■■□□□ 12.3
UPF1Q92900 ORAOV1-218ENST00000569105 696 ntTSL 219.48■□□□□ 0.711e-7■■□□□ 12.3
UPF1Q92900 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.07■□□□□ 0.481e-7■■□□□ 12.3
UPF1Q92900 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.231e-7■■□□□ 12.3
UPF1Q92900 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.061e-7■■□□□ 12.3
UPF1Q92900 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.041e-7■■□□□ 12.3
UPF1Q92900 ORAOV1-217ENST00000544096 3776 ntTSL 211.99□□□□□ -0.491e-7■■□□□ 12.3
UPF1Q92900 IER3-202ENST00000376377 1350 ntBASIC27.04■■□□□ 1.922e-9■■□□□ 12.3
UPF1Q92900 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.032e-9■■□□□ 12.3
UPF1Q92900 HAUS5-202ENST00000424522 4462 ntTSL 512.79□□□□□ -0.362e-7■■□□□ 12.3
UPF1Q92900 HAUS5-201ENST00000203166 4283 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.532e-7■■□□□ 12.3
UPF1Q92900 HAUS5-203ENST00000428854 4387 ntTSL 511.25□□□□□ -0.612e-7■■□□□ 12.3
UPF1Q92900 TRPM7-207ENST00000560955 7218 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.71e-6■■□□□ 12.3
UPF1Q92900 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.31e-6■■□□□ 12.3
UPF1Q92900 EIF5-203ENST00000558265 872 ntTSL 520.26■□□□□ 0.831e-6■■□□□ 12.3
UPF1Q92900 EIF5-221ENST00000561439 719 ntTSL 212.45□□□□□ -0.421e-6■■□□□ 12.3
UPF1Q92900 EIF5-208ENST00000559011 386 ntTSL 211.49□□□□□ -0.571e-6■■□□□ 12.3
UPF1Q92900 CLCN7-213ENST00000567836 647 ntTSL 228.72■■■□□ 2.194e-6■■□□□ 12.2
UPF1Q92900 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.082e-7■■□□□ 12.2
UPF1Q92900 ATP2A3-208ENST00000570845 604 ntTSL 1 (best)15.46■□□□□ 0.072e-7■■□□□ 12.2
UPF1Q92900 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.39■□□□□ 0.052e-7■■□□□ 12.2
UPF1Q92900 ATP2A3-203ENST00000359983 3290 ntTSL 5 BASIC12.49□□□□□ -0.412e-7■■□□□ 12.2
UPF1Q92900 HOXB2-203ENST00000571287 625 ntTSL 332.38■■■□□ 2.772e-6■■□□□ 12.2
Retrieved 100 of 15,879 protein–RNA pairs in 85.7 ms