Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 BX276092.7-203ENST00000637198 1536 ntBASIC17.2■□□□□ 0.34
LMX1AQ8TE12 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 AC003669.1-201ENST00000334569 611 ntBASIC17.19■□□□□ 0.34
LMX1AQ8TE12 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 SIGLEC30P-201ENST00000455569 941 ntBASIC17.19■□□□□ 0.34
LMX1AQ8TE12 AC108751.1-201ENST00000490852 363 ntBASIC17.19■□□□□ 0.34
LMX1AQ8TE12 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 AL139424.1-201ENST00000607572 797 ntBASIC17.19■□□□□ 0.34
LMX1AQ8TE12 AC019129.2-201ENST00000609837 1235 ntBASIC17.19■□□□□ 0.34
LMX1AQ8TE12 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 TNXA-203ENST00000507684 2038 ntBASIC17.19■□□□□ 0.34
LMX1AQ8TE12 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
LMX1AQ8TE12 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 AC090340.1-201ENST00000620778 4980 ntBASIC17.18■□□□□ 0.34
LMX1AQ8TE12 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 IGHV3-52-201ENST00000519770 353 ntBASIC17.18■□□□□ 0.34
LMX1AQ8TE12 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 AC040169.1-201ENST00000565382 521 ntBASIC17.18■□□□□ 0.34
LMX1AQ8TE12 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 AC010327.4-202ENST00000591484 748 ntBASIC17.18■□□□□ 0.34
LMX1AQ8TE12 AC004706.3-202ENST00000621574 984 ntBASIC17.18■□□□□ 0.34
LMX1AQ8TE12 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
LMX1AQ8TE12 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 ELK2BP-201ENST00000415014 1224 ntBASIC17.17■□□□□ 0.34
LMX1AQ8TE12 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 AC005104.2-201ENST00000427818 678 ntBASIC17.17■□□□□ 0.34
LMX1AQ8TE12 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms