Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 AL353719.1-201ENST00000566847 864 ntBASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 AC007663.1-201ENST00000438948 1240 ntBASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 BX664615.1-201ENST00000443558 458 ntBASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 LINC01238-205ENST00000567549 1107 ntBASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 AL118508.1-201ENST00000613502 2345 ntBASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
DEPDC4Q8N2C3 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 AL023284.2-201ENST00000405850 579 ntBASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 SERPINA7P1-201ENST00000443077 631 ntBASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.49■□□□□ 0.23
DEPDC4Q8N2C3 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
DEPDC4Q8N2C3 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms