Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 AC005336.2-201ENST00000593183 939 ntBASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 AC091076.1-201ENST00000610741 619 ntBASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC65Q8IXS2 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC65Q8IXS2 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC65Q8IXS2 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.64■□□□□ 0.74
CCDC65Q8IXS2 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
CCDC65Q8IXS2 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.74
CCDC65Q8IXS2 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC65Q8IXS2 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC65Q8IXS2 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.64■□□□□ 0.74
CCDC65Q8IXS2 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC65Q8IXS2 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 COX5BP2-201ENST00000392354 334 ntBASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 AL138831.2-201ENST00000606564 490 ntBASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC65Q8IXS2 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 AL138688.1-201ENST00000624851 1594 ntBASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 AC005104.2-201ENST00000427818 678 ntBASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC65Q8IXS2 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC65Q8IXS2 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms