Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 INTS4P1-201ENST00000438455 1935 ntBASIC17.29■□□□□ 0.36
VRK3Q8IV63 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
VRK3Q8IV63 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VRK3Q8IV63 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 AC005104.2-201ENST00000427818 678 ntBASIC17.28■□□□□ 0.36
VRK3Q8IV63 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 AC114341.1-201ENST00000618070 349 ntBASIC17.28■□□□□ 0.36
VRK3Q8IV63 LINC01451-201ENST00000623792 534 ntBASIC17.28■□□□□ 0.36
VRK3Q8IV63 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
VRK3Q8IV63 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VRK3Q8IV63 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 AC122714.2-201ENST00000502787 707 ntBASIC17.27■□□□□ 0.36
VRK3Q8IV63 KRT18P56-201ENST00000507275 550 ntBASIC17.27■□□□□ 0.36
VRK3Q8IV63 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VRK3Q8IV63 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VRK3Q8IV63 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VRK3Q8IV63 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
VRK3Q8IV63 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.27■□□□□ 0.35
VRK3Q8IV63 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.27■□□□□ 0.35
VRK3Q8IV63 AL049757.1-201ENST00000616842 1596 ntBASIC17.27■□□□□ 0.35
VRK3Q8IV63 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VRK3Q8IV63 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VRK3Q8IV63 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
VRK3Q8IV63 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.27■□□□□ 0.35
VRK3Q8IV63 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
VRK3Q8IV63 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 POM121L3P-201ENST00000419331 1163 ntBASIC17.26■□□□□ 0.35
VRK3Q8IV63 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 AC109462.3-201ENST00000573934 613 ntBASIC17.26■□□□□ 0.35
VRK3Q8IV63 CLEC4GP1-201ENST00000596555 870 ntBASIC17.26■□□□□ 0.35
VRK3Q8IV63 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VRK3Q8IV63 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.26■□□□□ 0.35
VRK3Q8IV63 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms