Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AL356488.2-201ENST00000602755 427 ntBASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 AC140113.2-201ENST00000604370 208 ntBASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 AC100803.2-201ENST00000562459 1963 ntBASIC20.25■□□□□ 0.83
SH3RF1Q7Z6J0 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 RPS8P6-201ENST00000426177 609 ntBASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 IGHV3-22-201ENST00000520721 359 ntBASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 AC145285.3-201ENST00000564603 959 ntBASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 AP001160.2-201ENST00000596071 487 ntBASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SH3RF1Q7Z6J0 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 RPSAP43-201ENST00000402237 625 ntBASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 AC098831.1-202ENST00000438821 336 ntBASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SH3RF1Q7Z6J0 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 AP001269.4-201ENST00000609611 512 ntBASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 AC027601.4-201ENST00000611259 610 ntBASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SH3RF1Q7Z6J0 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms