Protein–RNA interactions for Protein: Q6ZW05

PTCHD4, Patched domain-containing protein 4, humanhuman

Predictions only

Length 846 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4Q6ZW05 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD4Q6ZW05 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD4Q6ZW05 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD4Q6ZW05 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD4Q6ZW05 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD4Q6ZW05 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.32■□□□□ 0.2
PTCHD4Q6ZW05 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PTCHD4Q6ZW05 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 KRT8P9-201ENST00000558927 1449 ntBASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 KRT17P2-201ENST00000300992 1314 ntBASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 TSPY14P-201ENST00000303979 915 ntBASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
PTCHD4Q6ZW05 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 CYP2D8P-201ENST00000433633 1490 ntBASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 AC010653.2-201ENST00000623505 997 ntBASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 AP006294.2-201ENST00000641667 209 ntBASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD4Q6ZW05 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 LINC00304-203ENST00000565008 1864 ntBASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD4Q6ZW05 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms