Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS53Q5VIR6 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.38■■□□□ 1.01
VPS53Q5VIR6 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS53Q5VIR6 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS53Q5VIR6 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
VPS53Q5VIR6 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
VPS53Q5VIR6 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS53Q5VIR6 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.38■■□□□ 1.01
VPS53Q5VIR6 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
VPS53Q5VIR6 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
VPS53Q5VIR6 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 KRT17P6-201ENST00000453795 1220 ntBASIC21.37■■□□□ 1.01
VPS53Q5VIR6 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.37■■□□□ 1.01
VPS53Q5VIR6 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 AC246785.2-201ENST00000432512 513 ntBASIC21.36■■□□□ 1.01
VPS53Q5VIR6 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 AL138831.2-201ENST00000606564 490 ntBASIC21.36■■□□□ 1.01
VPS53Q5VIR6 AC012313.10-201ENST00000623509 926 ntBASIC21.36■■□□□ 1.01
VPS53Q5VIR6 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 AC125634.1-201ENST00000438758 1403 ntBASIC21.36■■□□□ 1.01
VPS53Q5VIR6 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
VPS53Q5VIR6 AC010460.3-201ENST00000511359 1579 ntBASIC21.36■■□□□ 1.01
VPS53Q5VIR6 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 NSUN5P1-202ENST00000421140 1535 ntBASIC21.35■■□□□ 1.01
VPS53Q5VIR6 NSUN5P2-203ENST00000457352 1529 ntBASIC21.35■■□□□ 1.01
VPS53Q5VIR6 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 AC074051.2-201ENST00000565115 352 ntBASIC21.35■■□□□ 1.01
VPS53Q5VIR6 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
VPS53Q5VIR6 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 BNIP3P18-201ENST00000593976 575 ntBASIC21.34■■□□□ 1.01
VPS53Q5VIR6 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
VPS53Q5VIR6 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms