Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
RNF4P78317 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
RNF4P78317 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.39■□□□□ 0.21
RNF4P78317 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.39■□□□□ 0.21
RNF4P78317 AKR1C7P-201ENST00000305623 895 ntBASIC16.39■□□□□ 0.21
RNF4P78317 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 AC103564.2-201ENST00000432853 1299 ntBASIC16.39■□□□□ 0.21
RNF4P78317 FAAHP1-202ENST00000446499 1238 ntBASIC16.39■□□□□ 0.21
RNF4P78317 SAPCD2P3-201ENST00000455031 850 ntBASIC16.39■□□□□ 0.21
RNF4P78317 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.39■□□□□ 0.21
RNF4P78317 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.39■□□□□ 0.21
RNF4P78317 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.39■□□□□ 0.21
RNF4P78317 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.39■□□□□ 0.21
RNF4P78317 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RNF4P78317 AL121894.2-201ENST00000602977 491 ntBASIC16.39■□□□□ 0.21
RNF4P78317 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.39■□□□□ 0.21
RNF4P78317 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.39■□□□□ 0.21
RNF4P78317 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
RNF4P78317 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
RNF4P78317 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 NOC2LP1-202ENST00000452600 2235 ntBASIC16.39■□□□□ 0.21
RNF4P78317 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.39■□□□□ 0.21
RNF4P78317 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
RNF4P78317 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
RNF4P78317 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
RNF4P78317 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF4P78317 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF4P78317 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 ABCD1P5-201ENST00000445663 754 ntBASIC16.38■□□□□ 0.21
RNF4P78317 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.38■□□□□ 0.21
RNF4P78317 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
RNF4P78317 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF4P78317 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.38■□□□□ 0.21
RNF4P78317 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
RNF4P78317 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
RNF4P78317 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
RNF4P78317 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.37■□□□□ 0.21
RNF4P78317 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
RNF4P78317 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms