Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.42
CKS1BP61024 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
CKS1BP61024 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC12.45□□□□□ -0.42
CKS1BP61024 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 NCF1B-203ENST00000435988 1254 ntBASIC12.45□□□□□ -0.42
CKS1BP61024 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC12.45□□□□□ -0.42
CKS1BP61024 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC12.45□□□□□ -0.42
CKS1BP61024 UNC93B4-201ENST00000505679 747 ntBASIC12.45□□□□□ -0.42
CKS1BP61024 INO80E-214ENST00000620599 515 ntTSL 2 BASIC12.45□□□□□ -0.42
CKS1BP61024 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
CKS1BP61024 AC133041.1-202ENST00000642053 222 ntBASIC12.45□□□□□ -0.42
CKS1BP61024 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
CKS1BP61024 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC12.45□□□□□ -0.42
CKS1BP61024 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC12.45□□□□□ -0.42
CKS1BP61024 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC12.45□□□□□ -0.42
CKS1BP61024 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC12.45□□□□□ -0.42
CKS1BP61024 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC12.45□□□□□ -0.42
CKS1BP61024 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC12.45□□□□□ -0.42
CKS1BP61024 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC12.45□□□□□ -0.42
CKS1BP61024 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC12.45□□□□□ -0.42
CKS1BP61024 SBF1P1-201ENST00000444527 5631 ntBASIC12.45□□□□□ -0.42
CKS1BP61024 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
CKS1BP61024 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC12.44□□□□□ -0.42
CKS1BP61024 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC12.44□□□□□ -0.42
CKS1BP61024 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC12.44□□□□□ -0.42
CKS1BP61024 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC12.44□□□□□ -0.42
CKS1BP61024 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC12.44□□□□□ -0.42
CKS1BP61024 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC12.44□□□□□ -0.42
CKS1BP61024 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC12.44□□□□□ -0.42
CKS1BP61024 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC12.44□□□□□ -0.42
CKS1BP61024 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC12.44□□□□□ -0.42
CKS1BP61024 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC12.44□□□□□ -0.42
CKS1BP61024 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC12.44□□□□□ -0.42
CKS1BP61024 AL645608.8-201ENST00000606034 2086 ntBASIC12.44□□□□□ -0.42
CKS1BP61024 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC12.44□□□□□ -0.42
CKS1BP61024 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC12.44□□□□□ -0.42
CKS1BP61024 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC12.43□□□□□ -0.42
CKS1BP61024 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
CKS1BP61024 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC12.43□□□□□ -0.42
CKS1BP61024 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms