Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
FOXA1P55317 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
FOXA1P55317 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.14■□□□□ 0.33
FOXA1P55317 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.14■□□□□ 0.33
FOXA1P55317 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.14■□□□□ 0.33
FOXA1P55317 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.14■□□□□ 0.33
FOXA1P55317 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.14■□□□□ 0.33
FOXA1P55317 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
FOXA1P55317 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
FOXA1P55317 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.13■□□□□ 0.33
FOXA1P55317 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.13■□□□□ 0.33
FOXA1P55317 AC124067.4-201ENST00000519691 2379 ntBASIC17.13■□□□□ 0.33
FOXA1P55317 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.13■□□□□ 0.33
FOXA1P55317 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXA1P55317 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.13■□□□□ 0.33
FOXA1P55317 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.13■□□□□ 0.33
FOXA1P55317 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.13■□□□□ 0.33
FOXA1P55317 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.13■□□□□ 0.33
FOXA1P55317 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
FOXA1P55317 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
FOXA1P55317 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
FOXA1P55317 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
FOXA1P55317 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
FOXA1P55317 BX276092.7-203ENST00000637198 1536 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXA1P55317 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.12■□□□□ 0.33
FOXA1P55317 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 AL121761.2-201ENST00000598007 1648 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 MIR662-201ENST00000384847 95 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 AC005104.2-201ENST00000427818 678 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 AL137013.1-201ENST00000432946 1228 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 BX664615.1-201ENST00000443558 458 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 AC068472.1-201ENST00000474589 881 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 AP003733.1-201ENST00000491725 852 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 AC005363.2-201ENST00000618631 242 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 AC097493.4-201ENST00000641197 219 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXA1P55317 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.12■□□□□ 0.33
FOXA1P55317 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
FOXA1P55317 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 AL353692.3-201ENST00000407031 1396 ntBASIC17.12■□□□□ 0.33
FOXA1P55317 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
FOXA1P55317 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.12■□□□□ 0.33
FOXA1P55317 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
FOXA1P55317 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.11■□□□□ 0.33
FOXA1P55317 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.11■□□□□ 0.33
FOXA1P55317 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
FOXA1P55317 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms