Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A4P53420 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
COL4A4P53420 AC093214.1-201ENST00000511688 1107 ntBASIC18.79■□□□□ 0.6
COL4A4P53420 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.79■□□□□ 0.6
COL4A4P53420 AC009093.7-201ENST00000623853 1223 ntBASIC18.79■□□□□ 0.6
COL4A4P53420 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
COL4A4P53420 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 ABALON-201ENST00000629058 1903 ntBASIC18.78■□□□□ 0.6
COL4A4P53420 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
COL4A4P53420 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.78■□□□□ 0.6
COL4A4P53420 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.78■□□□□ 0.6
COL4A4P53420 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.78■□□□□ 0.6
COL4A4P53420 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A4P53420 AL513210.1-201ENST00000629608 234 ntBASIC18.78■□□□□ 0.6
COL4A4P53420 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.78■□□□□ 0.6
COL4A4P53420 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.78■□□□□ 0.6
COL4A4P53420 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL4A4P53420 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A4P53420 FLJ13224-201ENST00000313737 1514 ntBASIC18.77■□□□□ 0.6
COL4A4P53420 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A4P53420 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A4P53420 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A4P53420 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.77■□□□□ 0.6
COL4A4P53420 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.77■□□□□ 0.6
COL4A4P53420 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A4P53420 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A4P53420 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A4P53420 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.77■□□□□ 0.6
COL4A4P53420 AC007274.1-201ENST00000439805 662 ntBASIC18.77■□□□□ 0.6
COL4A4P53420 PAWRP1-201ENST00000451083 565 ntBASIC18.77■□□□□ 0.6
COL4A4P53420 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.77■□□□□ 0.6
COL4A4P53420 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.77■□□□□ 0.6
COL4A4P53420 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.77■□□□□ 0.6
COL4A4P53420 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A4P53420 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A4P53420 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.77■□□□□ 0.6
COL4A4P53420 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
COL4A4P53420 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL4A4P53420 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.77■□□□□ 0.6
COL4A4P53420 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A4P53420 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
COL4A4P53420 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A4P53420 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A4P53420 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A4P53420 BCAR1-209ENST00000546196 1340 ntBASIC18.77■□□□□ 0.59
COL4A4P53420 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A4P53420 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL4A4P53420 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL4A4P53420 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL4A4P53420 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A4P53420 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.76■□□□□ 0.59
COL4A4P53420 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC18.76■□□□□ 0.59
COL4A4P53420 Z92544.3-201ENST00000624747 417 ntBASIC18.76■□□□□ 0.59
COL4A4P53420 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A4P53420 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A4P53420 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A4P53420 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A4P53420 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A4P53420 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A4P53420 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A4P53420 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
COL4A4P53420 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A4P53420 PMS2P4-201ENST00000412466 1052 ntBASIC18.76■□□□□ 0.59
COL4A4P53420 AL020989.1-201ENST00000422979 469 ntBASIC18.76■□□□□ 0.59
COL4A4P53420 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A4P53420 RHOQP3-201ENST00000437982 621 ntBASIC18.76■□□□□ 0.59
COL4A4P53420 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A4P53420 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A4P53420 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.76■□□□□ 0.59
COL4A4P53420 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A4P53420 AC069262.1-201ENST00000539058 672 ntBASIC18.76■□□□□ 0.59
COL4A4P53420 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A4P53420 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
COL4A4P53420 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A4P53420 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL4A4P53420 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A4P53420 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL4A4P53420 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms