Protein–RNA interactions for Protein: P51532

SMARCA4, Transcription activator BRG1, humanhuman

Predictions only

Length 1,647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4P51532 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SMARCA4P51532 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC31.37■■■□□ 2.61
SMARCA4P51532 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SMARCA4P51532 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC31.37■■■□□ 2.61
SMARCA4P51532 FLYWCH1P1-201ENST00000460917 1874 ntBASIC31.37■■■□□ 2.61
SMARCA4P51532 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC31.37■■■□□ 2.61
SMARCA4P51532 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC31.36■■■□□ 2.61
SMARCA4P51532 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC31.36■■■□□ 2.61
SMARCA4P51532 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
SMARCA4P51532 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC31.36■■■□□ 2.61
SMARCA4P51532 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC31.36■■■□□ 2.61
SMARCA4P51532 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC31.36■■■□□ 2.61
SMARCA4P51532 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC31.36■■■□□ 2.61
SMARCA4P51532 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SMARCA4P51532 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SMARCA4P51532 ENSA-206ENST00000361631 725 ntTSL 2 BASIC31.35■■■□□ 2.61
SMARCA4P51532 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC31.35■■■□□ 2.61
SMARCA4P51532 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC31.35■■■□□ 2.61
SMARCA4P51532 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC31.35■■■□□ 2.61
SMARCA4P51532 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC31.35■■■□□ 2.61
SMARCA4P51532 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC31.35■■■□□ 2.61
SMARCA4P51532 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC31.35■■■□□ 2.61
SMARCA4P51532 HARS-203ENST00000431330 1774 ntTSL 2 BASIC31.35■■■□□ 2.61
SMARCA4P51532 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC31.35■■■□□ 2.61
SMARCA4P51532 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SMARCA4P51532 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SMARCA4P51532 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SMARCA4P51532 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC31.35■■■□□ 2.61
SMARCA4P51532 KLF2P3-201ENST00000451977 1087 ntBASIC31.35■■■□□ 2.61
SMARCA4P51532 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC31.35■■■□□ 2.61
SMARCA4P51532 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC31.35■■■□□ 2.61
SMARCA4P51532 TSFM-210ENST00000550559 897 ntTSL 5 BASIC31.35■■■□□ 2.61
SMARCA4P51532 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
SMARCA4P51532 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SMARCA4P51532 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SMARCA4P51532 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC31.34■■■□□ 2.61
SMARCA4P51532 FAM207CP-201ENST00000443486 507 ntBASIC31.34■■■□□ 2.61
SMARCA4P51532 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC31.34■■■□□ 2.61
SMARCA4P51532 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
SMARCA4P51532 POR-209ENST00000439269 1858 ntTSL 2 BASIC31.33■■■□□ 2.61
SMARCA4P51532 AC093677.2-201ENST00000600169 1863 ntBASIC31.33■■■□□ 2.61
SMARCA4P51532 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC31.33■■■□□ 2.61
SMARCA4P51532 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC31.33■■■□□ 2.61
SMARCA4P51532 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
SMARCA4P51532 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC31.33■■■□□ 2.61
SMARCA4P51532 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SMARCA4P51532 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SMARCA4P51532 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC31.33■■■□□ 2.61
SMARCA4P51532 AC055876.3-201ENST00000431496 288 ntBASIC31.33■■■□□ 2.61
SMARCA4P51532 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
SMARCA4P51532 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC31.33■■■□□ 2.61
SMARCA4P51532 RNA5SP421-201ENST00000516864 134 ntBASIC31.33■■■□□ 2.61
SMARCA4P51532 AC138649.4-201ENST00000612222 287 ntBASIC31.33■■■□□ 2.61
SMARCA4P51532 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC31.33■■■□□ 2.61
SMARCA4P51532 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SMARCA4P51532 CROCCP3-202ENST00000420820 1947 ntBASIC31.33■■■□□ 2.61
SMARCA4P51532 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
SMARCA4P51532 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
SMARCA4P51532 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC31.32■■■□□ 2.61
SMARCA4P51532 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC31.32■■■□□ 2.61
SMARCA4P51532 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SMARCA4P51532 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC31.32■■■□□ 2.6
SMARCA4P51532 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC31.32■■■□□ 2.6
SMARCA4P51532 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SMARCA4P51532 AC116407.2-201ENST00000613639 860 ntBASIC31.32■■■□□ 2.6
SMARCA4P51532 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
SMARCA4P51532 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC31.32■■■□□ 2.6
SMARCA4P51532 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SMARCA4P51532 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC31.32■■■□□ 2.6
SMARCA4P51532 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SMARCA4P51532 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
SMARCA4P51532 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SMARCA4P51532 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
SMARCA4P51532 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC31.32■■■□□ 2.6
SMARCA4P51532 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
SMARCA4P51532 CENPM-205ENST00000404067 905 ntTSL 3 BASIC31.31■■■□□ 2.6
SMARCA4P51532 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SMARCA4P51532 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC31.31■■■□□ 2.6
SMARCA4P51532 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SMARCA4P51532 AC243562.1-201ENST00000560672 389 ntBASIC31.31■■■□□ 2.6
SMARCA4P51532 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SMARCA4P51532 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
SMARCA4P51532 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC31.31■■■□□ 2.6
SMARCA4P51532 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SMARCA4P51532 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC31.31■■■□□ 2.6
SMARCA4P51532 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
SMARCA4P51532 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
SMARCA4P51532 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC31.31■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms