Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC21.48■■□□□ 1.03
COL4A1P02462 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
COL4A1P02462 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A1P02462 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A1P02462 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.48■■□□□ 1.03
COL4A1P02462 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A1P02462 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A1P02462 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A1P02462 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A1P02462 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A1P02462 AC254562.1-201ENST00000417586 456 ntBASIC21.48■■□□□ 1.03
COL4A1P02462 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.48■■□□□ 1.03
COL4A1P02462 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC21.48■■□□□ 1.03
COL4A1P02462 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A1P02462 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A1P02462 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL4A1P02462 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.48■■□□□ 1.03
COL4A1P02462 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
COL4A1P02462 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
COL4A1P02462 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.48■■□□□ 1.03
COL4A1P02462 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC21.48■■□□□ 1.03
COL4A1P02462 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
COL4A1P02462 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
COL4A1P02462 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC21.47■■□□□ 1.03
COL4A1P02462 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A1P02462 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC21.47■■□□□ 1.03
COL4A1P02462 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC21.47■■□□□ 1.03
COL4A1P02462 AQP6-205ENST00000618286 829 ntTSL 5 BASIC21.47■■□□□ 1.03
COL4A1P02462 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
COL4A1P02462 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A1P02462 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A1P02462 KRT18P55-202ENST00000578578 1546 ntBASIC21.47■■□□□ 1.03
COL4A1P02462 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A1P02462 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A1P02462 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL4A1P02462 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC21.47■■□□□ 1.03
COL4A1P02462 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.47■■□□□ 1.03
COL4A1P02462 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC21.47■■□□□ 1.03
COL4A1P02462 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC21.47■■□□□ 1.03
COL4A1P02462 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
COL4A1P02462 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC21.47■■□□□ 1.03
COL4A1P02462 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.47■■□□□ 1.03
COL4A1P02462 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC21.46■■□□□ 1.03
COL4A1P02462 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 CYP51A1P2-201ENST00000419457 1499 ntBASIC21.46■■□□□ 1.03
COL4A1P02462 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC21.46■■□□□ 1.03
COL4A1P02462 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
COL4A1P02462 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.46■■□□□ 1.03
COL4A1P02462 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.46■■□□□ 1.03
COL4A1P02462 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC21.46■■□□□ 1.03
COL4A1P02462 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
COL4A1P02462 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC21.46■■□□□ 1.03
COL4A1P02462 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 AC091812.2-201ENST00000619081 385 ntBASIC21.46■■□□□ 1.03
COL4A1P02462 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
COL4A1P02462 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.46■■□□□ 1.03
COL4A1P02462 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL4A1P02462 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.46■■□□□ 1.03
COL4A1P02462 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.45■■□□□ 1.03
COL4A1P02462 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.45■■□□□ 1.02
COL4A1P02462 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.45■■□□□ 1.02
COL4A1P02462 AMT-250ENST00000637682 1823 ntTSL 5 BASIC21.45■■□□□ 1.02
COL4A1P02462 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A1P02462 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A1P02462 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A1P02462 MKNK2P1-201ENST00000437526 628 ntBASIC21.45■■□□□ 1.02
COL4A1P02462 CYMP-203ENST00000474680 1263 ntBASIC21.45■■□□□ 1.02
COL4A1P02462 SLC25A6P2-201ENST00000497974 877 ntBASIC21.45■■□□□ 1.02
COL4A1P02462 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC21.45■■□□□ 1.02
COL4A1P02462 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC21.45■■□□□ 1.02
COL4A1P02462 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.45■■□□□ 1.02
COL4A1P02462 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC21.45■■□□□ 1.02
COL4A1P02462 AC092902.6-201ENST00000641783 218 ntBASIC21.45■■□□□ 1.02
COL4A1P02462 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
COL4A1P02462 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
COL4A1P02462 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A1P02462 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A1P02462 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A1P02462 BCAR1-209ENST00000546196 1340 ntBASIC21.45■■□□□ 1.02
COL4A1P02462 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A1P02462 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL4A1P02462 AL135999.2-201ENST00000622438 1686 ntBASIC21.44■■□□□ 1.02
COL4A1P02462 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A1P02462 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A1P02462 AL139400.1-201ENST00000366220 510 ntBASIC21.44■■□□□ 1.02
COL4A1P02462 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
COL4A1P02462 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC21.44■■□□□ 1.02
COL4A1P02462 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.44■■□□□ 1.02
COL4A1P02462 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC21.44■■□□□ 1.02
COL4A1P02462 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC21.44■■□□□ 1.02
COL4A1P02462 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms