Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
COL2A1P02458 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.5■□□□□ 0.87
COL2A1P02458 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC20.5■□□□□ 0.87
COL2A1P02458 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.5■□□□□ 0.87
COL2A1P02458 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.5■□□□□ 0.87
COL2A1P02458 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC20.5■□□□□ 0.87
COL2A1P02458 AQP6-205ENST00000618286 829 ntTSL 5 BASIC20.5■□□□□ 0.87
COL2A1P02458 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.5■□□□□ 0.87
COL2A1P02458 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
COL2A1P02458 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
COL2A1P02458 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.5■□□□□ 0.87
COL2A1P02458 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
COL2A1P02458 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 LINC00304-203ENST00000565008 1864 ntBASIC20.5■□□□□ 0.87
COL2A1P02458 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.5■□□□□ 0.87
COL2A1P02458 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC20.5■□□□□ 0.87
COL2A1P02458 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC20.5■□□□□ 0.87
COL2A1P02458 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.5■□□□□ 0.87
COL2A1P02458 MIR4469-201ENST00000583919 79 ntBASIC20.5■□□□□ 0.87
COL2A1P02458 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL2A1P02458 AL078644.1-201ENST00000609881 752 ntBASIC20.5■□□□□ 0.87
COL2A1P02458 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.49■□□□□ 0.87
COL2A1P02458 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.49■□□□□ 0.87
COL2A1P02458 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.49■□□□□ 0.87
COL2A1P02458 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL2A1P02458 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.49■□□□□ 0.87
COL2A1P02458 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL2A1P02458 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL2A1P02458 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL2A1P02458 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL2A1P02458 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC20.49■□□□□ 0.87
COL2A1P02458 HTR5BP-201ENST00000430851 1154 ntBASIC20.49■□□□□ 0.87
COL2A1P02458 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.49■□□□□ 0.87
COL2A1P02458 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC20.49■□□□□ 0.87
COL2A1P02458 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL2A1P02458 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL2A1P02458 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC20.49■□□□□ 0.87
COL2A1P02458 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC20.49■□□□□ 0.87
COL2A1P02458 AC027796.2-201ENST00000575326 344 ntBASIC20.49■□□□□ 0.87
COL2A1P02458 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20.49■□□□□ 0.87
COL2A1P02458 AC004877.2-201ENST00000623941 599 ntBASIC20.49■□□□□ 0.87
COL2A1P02458 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL2A1P02458 BICD1-207ENST00000551848 1962 ntBASIC20.49■□□□□ 0.87
COL2A1P02458 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.49■□□□□ 0.87
COL2A1P02458 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
COL2A1P02458 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.48■□□□□ 0.87
COL2A1P02458 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.48■□□□□ 0.87
COL2A1P02458 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.48■□□□□ 0.87
COL2A1P02458 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.48■□□□□ 0.87
COL2A1P02458 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
COL2A1P02458 RPS8P6-201ENST00000426177 609 ntBASIC20.48■□□□□ 0.87
COL2A1P02458 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL2A1P02458 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC20.48■□□□□ 0.87
COL2A1P02458 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC20.48■□□□□ 0.87
COL2A1P02458 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC20.48■□□□□ 0.87
COL2A1P02458 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC20.48■□□□□ 0.87
COL2A1P02458 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL2A1P02458 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.48■□□□□ 0.87
COL2A1P02458 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 AC009113.1-201ENST00000570267 2443 ntBASIC20.47■□□□□ 0.87
COL2A1P02458 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 ABALON-201ENST00000629058 1903 ntBASIC20.47■□□□□ 0.87
COL2A1P02458 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.47■□□□□ 0.87
COL2A1P02458 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
COL2A1P02458 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.47■□□□□ 0.87
COL2A1P02458 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL2A1P02458 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms