Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
NPHP4O75161 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP4O75161 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP4O75161 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC24.67■■□□□ 1.54
NPHP4O75161 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC24.67■■□□□ 1.54
NPHP4O75161 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
NPHP4O75161 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP4O75161 ADM-207ENST00000530439 1839 ntTSL 2 BASIC24.67■■□□□ 1.54
NPHP4O75161 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP4O75161 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC24.67■■□□□ 1.54
NPHP4O75161 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP4O75161 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP4O75161 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP4O75161 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP4O75161 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP4O75161 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
NPHP4O75161 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC24.66■■□□□ 1.54
NPHP4O75161 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP4O75161 ME2-218ENST00000640965 2476 ntTSL 5 BASIC24.66■■□□□ 1.54
NPHP4O75161 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP4O75161 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC24.66■■□□□ 1.54
NPHP4O75161 CALY-202ENST00000368555 783 ntTSL 2 BASIC24.66■■□□□ 1.54
NPHP4O75161 AC087163.2-201ENST00000457299 853 ntBASIC24.66■■□□□ 1.54
NPHP4O75161 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
NPHP4O75161 AC084121.4-201ENST00000641598 221 ntBASIC24.66■■□□□ 1.54
NPHP4O75161 AF228730.8-201ENST00000642140 221 ntBASIC24.66■■□□□ 1.54
NPHP4O75161 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP4O75161 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NPHP4O75161 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP4O75161 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP4O75161 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP4O75161 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP4O75161 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
NPHP4O75161 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP4O75161 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP4O75161 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC24.65■■□□□ 1.54
NPHP4O75161 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC24.65■■□□□ 1.54
NPHP4O75161 AL606495.2-201ENST00000605867 535 ntBASIC24.65■■□□□ 1.54
NPHP4O75161 AL645728.2-201ENST00000641974 660 ntBASIC24.65■■□□□ 1.54
NPHP4O75161 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP4O75161 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC24.65■■□□□ 1.54
NPHP4O75161 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC24.65■■□□□ 1.54
NPHP4O75161 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP4O75161 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP4O75161 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC24.65■■□□□ 1.54
NPHP4O75161 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
NPHP4O75161 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
NPHP4O75161 HARS-201ENST00000307633 1780 ntTSL 2 BASIC24.64■■□□□ 1.54
NPHP4O75161 PHGDH-209ENST00000641074 1780 ntBASIC24.64■■□□□ 1.54
NPHP4O75161 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP4O75161 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP4O75161 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP4O75161 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC24.64■■□□□ 1.54
NPHP4O75161 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
NPHP4O75161 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC24.64■■□□□ 1.54
NPHP4O75161 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC24.64■■□□□ 1.54
NPHP4O75161 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
NPHP4O75161 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC24.64■■□□□ 1.54
NPHP4O75161 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC24.64■■□□□ 1.54
NPHP4O75161 LINC01225-203ENST00000563550 1244 ntBASIC24.64■■□□□ 1.54
NPHP4O75161 MIR6080-201ENST00000617359 66 ntBASIC24.64■■□□□ 1.54
NPHP4O75161 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC24.64■■□□□ 1.54
NPHP4O75161 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
NPHP4O75161 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
NPHP4O75161 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC24.64■■□□□ 1.53
NPHP4O75161 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC24.63■■□□□ 1.53
NPHP4O75161 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
NPHP4O75161 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC24.63■■□□□ 1.53
NPHP4O75161 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC24.63■■□□□ 1.53
NPHP4O75161 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC24.63■■□□□ 1.53
NPHP4O75161 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC24.63■■□□□ 1.53
NPHP4O75161 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC24.63■■□□□ 1.53
NPHP4O75161 AC009118.2-201ENST00000613275 655 ntBASIC24.63■■□□□ 1.53
NPHP4O75161 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC24.63■■□□□ 1.53
NPHP4O75161 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC24.63■■□□□ 1.53
NPHP4O75161 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC24.63■■□□□ 1.53
NPHP4O75161 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC24.63■■□□□ 1.53
NPHP4O75161 HARS-203ENST00000431330 1774 ntTSL 2 BASIC24.63■■□□□ 1.53
NPHP4O75161 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC24.63■■□□□ 1.53
NPHP4O75161 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 ANO7L1-203ENST00000602586 1720 ntBASIC24.63■■□□□ 1.53
NPHP4O75161 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC24.63■■□□□ 1.53
NPHP4O75161 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
NPHP4O75161 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC24.63■■□□□ 1.53
NPHP4O75161 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
NPHP4O75161 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.62■■□□□ 1.53
NPHP4O75161 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC24.62■■□□□ 1.53
NPHP4O75161 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
NPHP4O75161 GATD1-206ENST00000526325 756 ntTSL 5 BASIC24.62■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms