Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
BRD4O60885 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
BRD4O60885 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC24.42■■□□□ 1.5
BRD4O60885 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC24.42■■□□□ 1.5
BRD4O60885 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC24.42■■□□□ 1.5
BRD4O60885 AC040169.1-201ENST00000565382 521 ntBASIC24.42■■□□□ 1.5
BRD4O60885 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC24.42■■□□□ 1.5
BRD4O60885 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC24.42■■□□□ 1.5
BRD4O60885 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
BRD4O60885 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC24.42■■□□□ 1.5
BRD4O60885 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC24.42■■□□□ 1.5
BRD4O60885 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC24.41■■□□□ 1.5
BRD4O60885 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC24.41■■□□□ 1.5
BRD4O60885 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
BRD4O60885 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC24.41■■□□□ 1.5
BRD4O60885 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC24.41■■□□□ 1.5
BRD4O60885 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
BRD4O60885 UPF3AP3-201ENST00000420996 769 ntBASIC24.41■■□□□ 1.5
BRD4O60885 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC24.41■■□□□ 1.5
BRD4O60885 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC24.41■■□□□ 1.5
BRD4O60885 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC24.41■■□□□ 1.5
BRD4O60885 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC24.41■■□□□ 1.5
BRD4O60885 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC24.41■■□□□ 1.5
BRD4O60885 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC24.41■■□□□ 1.5
BRD4O60885 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC24.41■■□□□ 1.5
BRD4O60885 AL022326.1-202ENST00000641533 845 ntBASIC24.41■■□□□ 1.5
BRD4O60885 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC24.41■■□□□ 1.5
BRD4O60885 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC24.4■■□□□ 1.5
BRD4O60885 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
BRD4O60885 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
BRD4O60885 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC24.4■■□□□ 1.5
BRD4O60885 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC24.4■■□□□ 1.5
BRD4O60885 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
BRD4O60885 KRT18P3-201ENST00000451602 1288 ntBASIC24.4■■□□□ 1.5
BRD4O60885 UNC93B6-202ENST00000528242 690 ntBASIC24.4■■□□□ 1.5
BRD4O60885 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC24.4■■□□□ 1.5
BRD4O60885 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC24.4■■□□□ 1.5
BRD4O60885 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
BRD4O60885 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
BRD4O60885 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
BRD4O60885 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
BRD4O60885 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
BRD4O60885 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC24.39■■□□□ 1.5
BRD4O60885 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC24.39■■□□□ 1.5
BRD4O60885 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
BRD4O60885 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC24.39■■□□□ 1.5
BRD4O60885 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
BRD4O60885 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC24.39■■□□□ 1.5
BRD4O60885 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
BRD4O60885 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
BRD4O60885 TBC1D3P5-201ENST00000579401 1545 ntBASIC24.39■■□□□ 1.49
BRD4O60885 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
BRD4O60885 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
BRD4O60885 MIR940-201ENST00000401276 94 ntBASIC24.39■■□□□ 1.49
BRD4O60885 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
BRD4O60885 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC24.39■■□□□ 1.49
BRD4O60885 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC24.39■■□□□ 1.49
BRD4O60885 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC24.39■■□□□ 1.49
BRD4O60885 PGM5P2-202ENST00000637225 1043 ntBASIC24.39■■□□□ 1.49
BRD4O60885 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
BRD4O60885 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
BRD4O60885 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC24.39■■□□□ 1.49
BRD4O60885 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC24.39■■□□□ 1.49
BRD4O60885 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
BRD4O60885 GNE-204ENST00000539208 2190 ntTSL 2 BASIC24.38■■□□□ 1.49
BRD4O60885 GNAS-203ENST00000306120 1878 ntBASIC24.38■■□□□ 1.49
BRD4O60885 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC24.38■■□□□ 1.49
BRD4O60885 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC24.38■■□□□ 1.49
BRD4O60885 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
BRD4O60885 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC24.38■■□□□ 1.49
BRD4O60885 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
BRD4O60885 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC24.38■■□□□ 1.49
BRD4O60885 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
BRD4O60885 RPSAP43-201ENST00000402237 625 ntBASIC24.38■■□□□ 1.49
BRD4O60885 AC004832.2-201ENST00000426397 482 ntBASIC24.38■■□□□ 1.49
BRD4O60885 GPX1P2-201ENST00000429271 606 ntBASIC24.38■■□□□ 1.49
BRD4O60885 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms