Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
SDCBPO00560 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.09■□□□□ 0.01
SDCBPO00560 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.09■□□□□ 0.01
SDCBPO00560 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.09■□□□□ 0.01
SDCBPO00560 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 TMA16-209ENST00000513272 803 ntTSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.09■□□□□ 0.01
SDCBPO00560 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC15.09■□□□□ 0.01
SDCBPO00560 MIR3180-4-201ENST00000582223 153 ntBASIC15.09■□□□□ 0.01
SDCBPO00560 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 AC010240.3-201ENST00000607688 395 ntBASIC15.09■□□□□ 0.01
SDCBPO00560 AC024243.1-201ENST00000609234 778 ntBASIC15.09■□□□□ 0.01
SDCBPO00560 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
SDCBPO00560 AL138688.1-201ENST00000624851 1594 ntBASIC15.09■□□□□ 0.01
SDCBPO00560 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
SDCBPO00560 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.09■□□□□ 0.01
SDCBPO00560 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.09■□□□□ 0.01
SDCBPO00560 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SDCBPO00560 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.08■□□□□ 0.01
SDCBPO00560 ASL-204ENST00000395331 1538 ntTSL 5 BASIC15.08■□□□□ 0.01
SDCBPO00560 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
SDCBPO00560 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.08■□□□□ 0
SDCBPO00560 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
SDCBPO00560 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
SDCBPO00560 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 Telomerase-vert.1-201ENST00000363312 438 ntBASIC15.08■□□□□ 0
SDCBPO00560 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 AP000523.1-201ENST00000398242 1049 ntBASIC15.08■□□□□ 0
SDCBPO00560 KIRREL3-AS3-201ENST00000404882 831 ntBASIC15.08■□□□□ 0
SDCBPO00560 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC15.08■□□□□ 0
SDCBPO00560 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.08■□□□□ 0
SDCBPO00560 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC15.08■□□□□ 0
SDCBPO00560 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC15.08■□□□□ 0
SDCBPO00560 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.08■□□□□ 0
SDCBPO00560 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC15.08■□□□□ 0
SDCBPO00560 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC15.08■□□□□ 0
SDCBPO00560 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC15.08■□□□□ 0
SDCBPO00560 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
SDCBPO00560 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
SDCBPO00560 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC15.08■□□□□ 0
SDCBPO00560 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.08■□□□□ 0
SDCBPO00560 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
SDCBPO00560 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SDCBPO00560 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SDCBPO00560 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SDCBPO00560 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SDCBPO00560 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC15.07■□□□□ 0
SDCBPO00560 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.07■□□□□ 0
SDCBPO00560 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.07■□□□□ 0
SDCBPO00560 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.07■□□□□ 0
SDCBPO00560 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC15.07■□□□□ 0
SDCBPO00560 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SDCBPO00560 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.07■□□□□ 0
SDCBPO00560 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SDCBPO00560 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC15.07■□□□□ 0
SDCBPO00560 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SDCBPO00560 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC15.07■□□□□ 0
SDCBPO00560 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SDCBPO00560 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC15.07■□□□□ 0
SDCBPO00560 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.07■□□□□ 0
SDCBPO00560 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC15.07■□□□□ 0
SDCBPO00560 NEK4P2-201ENST00000580004 1012 ntBASIC15.07■□□□□ 0
SDCBPO00560 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms