Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC85CA6NKD9 AL049757.1-201ENST00000616842 1596 ntBASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 AC087499.6-201ENST00000411576 835 ntBASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 SPDYE12P-201ENST00000618416 771 ntBASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 AL161645.1-201ENST00000622716 1255 ntBASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC85CA6NKD9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
CCDC85CA6NKD9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC85CA6NKD9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 CD81-202ENST00000381036 880 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 LY6E-204ENST00000519546 971 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 CD7-202ENST00000578509 925 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 AC093677.2-201ENST00000600169 1863 ntBASIC19.39■□□□□ 0.69
CCDC85CA6NKD9 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 HIST1H2BPS3-201ENST00000419683 341 ntBASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 GNAQP1-201ENST00000444815 1067 ntBASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 RN7SL837P-201ENST00000463010 287 ntBASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 AC008738.7-201ENST00000609744 511 ntBASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 AL138828.2-201ENST00000615812 383 ntBASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 FP475955.4-201ENST00000623131 1990 ntBASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC85CA6NKD9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC85CA6NKD9 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms