Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV3S1A0A5B6 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV3S1A0A5B6 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
TCRBV3S1A0A5B6 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV3S1A0A5B6 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV3S1A0A5B6 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV3S1A0A5B6 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV3S1A0A5B6 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
TCRBV3S1A0A5B6 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV3S1A0A5B6 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV3S1A0A5B6 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.58■□□□□ 0.25
TCRBV3S1A0A5B6 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.58■□□□□ 0.25
TCRBV3S1A0A5B6 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV3S1A0A5B6 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV3S1A0A5B6 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV3S1A0A5B6 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV3S1A0A5B6 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV3S1A0A5B6 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 KRT18P29-201ENST00000397031 1267 ntBASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 AC097488.1-201ENST00000507834 756 ntBASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 RNA5SP413-201ENST00000516373 109 ntBASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 AC104771.1-201ENST00000603335 964 ntBASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV3S1A0A5B6 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 AC092171.3-201ENST00000610122 2651 ntBASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 AL596257.1-201ENST00000641463 2694 ntBASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 AL355355.2-201ENST00000442321 338 ntBASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 AC116562.2-201ENST00000507042 360 ntBASIC16.56■□□□□ 0.24
TCRBV3S1A0A5B6 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms