Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 TSPY22P-201ENST00000427496 604 ntBASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 AL049597.2-201ENST00000565575 961 ntBASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS9D1Q9Y2B5 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
VPS9D1Q9Y2B5 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.64■□□□□ 0.42
VPS9D1Q9Y2B5 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 KRT18P21-201ENST00000515767 1272 ntBASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 AC011498.5-201ENST00000592027 486 ntBASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
VPS9D1Q9Y2B5 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS9D1Q9Y2B5 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms