Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88CQ9P219 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC88CQ9P219 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.91■□□□□ 0.3
CCDC88CQ9P219 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.91■□□□□ 0.3
CCDC88CQ9P219 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88CQ9P219 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CCDC88CQ9P219 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 AC106820.2-201ENST00000563775 3264 ntBASIC16.9■□□□□ 0.3
CCDC88CQ9P219 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 SLC25A6P5-201ENST00000435663 894 ntBASIC16.9■□□□□ 0.3
CCDC88CQ9P219 AC091304.2-201ENST00000564639 760 ntBASIC16.9■□□□□ 0.3
CCDC88CQ9P219 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 AC139713.2-201ENST00000641328 2723 ntBASIC16.9■□□□□ 0.3
CCDC88CQ9P219 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 LINC00896-202ENST00000609602 2128 ntBASIC16.9■□□□□ 0.3
CCDC88CQ9P219 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 PP12613-201ENST00000424958 2230 ntBASIC16.9■□□□□ 0.3
CCDC88CQ9P219 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC88CQ9P219 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC88CQ9P219 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 AL121772.3-201ENST00000610840 674 ntBASIC16.89■□□□□ 0.29
CCDC88CQ9P219 IGHV3-41-201ENST00000613121 348 ntBASIC16.89■□□□□ 0.29
CCDC88CQ9P219 AC148477.8-201ENST00000624298 468 ntBASIC16.89■□□□□ 0.29
CCDC88CQ9P219 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 FAAHP1-202ENST00000446499 1238 ntBASIC16.89■□□□□ 0.29
CCDC88CQ9P219 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC88CQ9P219 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 AC132938.6-201ENST00000623828 1655 ntBASIC16.88■□□□□ 0.29
CCDC88CQ9P219 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 AC010460.3-201ENST00000511359 1579 ntBASIC16.88■□□□□ 0.29
CCDC88CQ9P219 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 MTCL1P1-201ENST00000446207 792 ntBASIC16.88■□□□□ 0.29
CCDC88CQ9P219 FAM197Y8-203ENST00000450145 560 ntBASIC16.88■□□□□ 0.29
CCDC88CQ9P219 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 AC018712.1-201ENST00000455767 687 ntBASIC16.88■□□□□ 0.29
CCDC88CQ9P219 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 AC012317.2-201ENST00000623305 2251 ntBASIC16.88■□□□□ 0.29
CCDC88CQ9P219 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC88CQ9P219 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms