Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 SLC25A1P2-201ENST00000430693 912 ntBASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 AC007663.1-201ENST00000438948 1240 ntBASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 TSPY17P-201ENST00000450329 467 ntBASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.68■□□□□ 0.58
SMARCAL1Q9NZC9 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 CICP6-201ENST00000457191 2729 ntBASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SMARCAL1Q9NZC9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 AC008741.2-201ENST00000612792 3115 ntBASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 KRT8P47-201ENST00000604727 1398 ntBASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SMARCAL1Q9NZC9 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SMARCAL1Q9NZC9 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms