Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 HLA-DQB1-201ENST00000374943 1656 ntBASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 AC012618.2-201ENST00000428058 849 ntBASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 KRT8P7-201ENST00000533003 1432 ntBASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 AL049637.2-201ENST00000641778 930 ntBASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CHMP1AQ9HD42 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 HOXB1-202ENST00000577092 1414 ntBASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 PRORSD1P-201ENST00000295112 541 ntBASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 HIST1H2APS4-201ENST00000362070 348 ntBASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 AP003041.3-201ENST00000527151 707 ntBASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 AL118508.1-201ENST00000613502 2345 ntBASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 AL365209.1-201ENST00000624418 6473 ntBASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC15.29■□□□□ 0.04
CHMP1AQ9HD42 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 AC018695.7-201ENST00000624587 2492 ntBASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 AL023806.1-201ENST00000603994 1649 ntBASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 ASL-204ENST00000395331 1538 ntTSL 5 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CHMP1AQ9HD42 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms