Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 TFAMP1-201ENST00000412727 736 ntBASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 BASP1P1-201ENST00000430708 665 ntBASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 AC026120.1-201ENST00000611536 926 ntBASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ZNF541Q9H0D2 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 FALEC-201ENST00000416894 566 ntTSL 3 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 AC005237.2-201ENST00000434368 219 ntBASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 AL513480.1-201ENST00000451731 511 ntBASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 MEIS3P1-201ENST00000495167 958 ntBASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC21.06■□□□□ 0.96
ZNF541Q9H0D2 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 MIR943-201ENST00000401286 94 ntBASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC21.05■□□□□ 0.96
ZNF541Q9H0D2 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 FAM58DP-201ENST00000428076 619 ntBASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms