Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
RTFDC1Q9BY42 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTFDC1Q9BY42 AC093503.3-201ENST00000624917 2352 ntBASIC21.4■■□□□ 1.02
RTFDC1Q9BY42 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTFDC1Q9BY42 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTFDC1Q9BY42 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RTFDC1Q9BY42 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.4■■□□□ 1.02
RTFDC1Q9BY42 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.39■■□□□ 1.02
RTFDC1Q9BY42 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RTFDC1Q9BY42 AC097637.2-201ENST00000624096 1997 ntBASIC21.39■■□□□ 1.02
RTFDC1Q9BY42 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
RTFDC1Q9BY42 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.39■■□□□ 1.02
RTFDC1Q9BY42 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RTFDC1Q9BY42 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
RTFDC1Q9BY42 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RTFDC1Q9BY42 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 TSEN15P1-201ENST00000423257 515 ntBASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 AC093028.1-201ENST00000622998 982 ntBASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 AL096828.2-201ENST00000567259 1965 ntBASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 AC093677.2-201ENST00000600169 1863 ntBASIC21.39■■□□□ 1.01
RTFDC1Q9BY42 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 CALY-203ENST00000368558 825 ntTSL 5 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 LINC00982-205ENST00000420957 435 ntBASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 SPCS2P1-201ENST00000561636 679 ntBASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 AC091812.2-201ENST00000619081 385 ntBASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 AC092902.6-201ENST00000641783 218 ntBASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RTFDC1Q9BY42 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 AC023141.13-201ENST00000604991 943 ntBASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 AC007064.4-201ENST00000637740 555 ntBASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RTFDC1Q9BY42 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 BX276092.7-203ENST00000637198 1536 ntBASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.36■■□□□ 1.01
RTFDC1Q9BY42 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms