Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CDX2Q99626 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.34■□□□□ 0.53
CDX2Q99626 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CDX2Q99626 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDX2Q99626 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDX2Q99626 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDX2Q99626 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDX2Q99626 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDX2Q99626 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDX2Q99626 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CDX2Q99626 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.34■□□□□ 0.53
CDX2Q99626 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.34■□□□□ 0.53
CDX2Q99626 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.34■□□□□ 0.53
CDX2Q99626 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDX2Q99626 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.34■□□□□ 0.53
CDX2Q99626 HLA-DPB2-205ENST00000435074 1188 ntBASIC18.34■□□□□ 0.53
CDX2Q99626 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.34■□□□□ 0.53
CDX2Q99626 INE1-201ENST00000456273 945 ntBASIC18.34■□□□□ 0.53
CDX2Q99626 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.34■□□□□ 0.53
CDX2Q99626 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.34■□□□□ 0.53
CDX2Q99626 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.34■□□□□ 0.53
CDX2Q99626 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.34■□□□□ 0.53
CDX2Q99626 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.34■□□□□ 0.53
CDX2Q99626 AC019129.2-201ENST00000609837 1235 ntBASIC18.34■□□□□ 0.53
CDX2Q99626 AC084121.4-201ENST00000641598 221 ntBASIC18.34■□□□□ 0.53
CDX2Q99626 AF228730.8-201ENST00000642140 221 ntBASIC18.34■□□□□ 0.53
CDX2Q99626 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.34■□□□□ 0.53
CDX2Q99626 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CDX2Q99626 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
CDX2Q99626 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CDX2Q99626 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
CDX2Q99626 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
CDX2Q99626 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
CDX2Q99626 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDX2Q99626 AC112492.5-201ENST00000421897 457 ntBASIC18.33■□□□□ 0.52
CDX2Q99626 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
CDX2Q99626 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.33■□□□□ 0.52
CDX2Q99626 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
CDX2Q99626 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.33■□□□□ 0.52
CDX2Q99626 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.33■□□□□ 0.52
CDX2Q99626 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.52
CDX2Q99626 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.33■□□□□ 0.52
CDX2Q99626 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.33■□□□□ 0.52
CDX2Q99626 AC109462.3-201ENST00000573934 613 ntBASIC18.33■□□□□ 0.52
CDX2Q99626 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.33■□□□□ 0.52
CDX2Q99626 STK25P1-201ENST00000585406 838 ntBASIC18.33■□□□□ 0.52
CDX2Q99626 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDX2Q99626 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CDX2Q99626 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.52
CDX2Q99626 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDX2Q99626 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.33■□□□□ 0.52
CDX2Q99626 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CDX2Q99626 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDX2Q99626 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CDX2Q99626 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CDX2Q99626 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
CDX2Q99626 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.32■□□□□ 0.52
CDX2Q99626 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CDX2Q99626 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX2Q99626 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX2Q99626 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CDX2Q99626 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX2Q99626 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.32■□□□□ 0.52
CDX2Q99626 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX2Q99626 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDX2Q99626 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CDX2Q99626 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CDX2Q99626 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.32■□□□□ 0.52
CDX2Q99626 AC073592.8-201ENST00000624126 511 ntBASIC18.32■□□□□ 0.52
CDX2Q99626 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.32■□□□□ 0.52
CDX2Q99626 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX2Q99626 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX2Q99626 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX2Q99626 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CDX2Q99626 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CDX2Q99626 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.31■□□□□ 0.52
CDX2Q99626 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.31■□□□□ 0.52
CDX2Q99626 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CDX2Q99626 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.31■□□□□ 0.52
CDX2Q99626 ALG1L8P-201ENST00000533887 760 ntBASIC18.31■□□□□ 0.52
CDX2Q99626 KRT17P8-201ENST00000540749 863 ntBASIC18.31■□□□□ 0.52
CDX2Q99626 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 MIR4453-201ENST00000584019 89 ntBASIC18.31■□□□□ 0.52
CDX2Q99626 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.31■□□□□ 0.52
CDX2Q99626 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
CDX2Q99626 AL645728.2-201ENST00000641974 660 ntBASIC18.31■□□□□ 0.52
CDX2Q99626 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CDX2Q99626 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.31■□□□□ 0.52
CDX2Q99626 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms