Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CFAP54Q96N23 AC104581.1-202ENST00000635932 2618 ntBASIC17.24■□□□□ 0.35
CFAP54Q96N23 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.24■□□□□ 0.35
CFAP54Q96N23 AC099522.2-201ENST00000607001 744 ntBASIC17.24■□□□□ 0.35
CFAP54Q96N23 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CFAP54Q96N23 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CFAP54Q96N23 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CFAP54Q96N23 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CFAP54Q96N23 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.24■□□□□ 0.35
CFAP54Q96N23 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CFAP54Q96N23 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.24■□□□□ 0.35
CFAP54Q96N23 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.24■□□□□ 0.35
CFAP54Q96N23 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.24■□□□□ 0.35
CFAP54Q96N23 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.24■□□□□ 0.35
CFAP54Q96N23 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.24■□□□□ 0.35
CFAP54Q96N23 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CFAP54Q96N23 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CFAP54Q96N23 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 NCF1C-201ENST00000438382 1427 ntBASIC17.23■□□□□ 0.35
CFAP54Q96N23 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 AC004890.2-204ENST00000481968 304 ntBASIC17.23■□□□□ 0.35
CFAP54Q96N23 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CFAP54Q96N23 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
CFAP54Q96N23 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 AC008667.4-201ENST00000607370 168 ntBASIC17.22■□□□□ 0.35
CFAP54Q96N23 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 GNAS-203ENST00000306120 1878 ntBASIC17.22■□□□□ 0.35
CFAP54Q96N23 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 MIR4538-201ENST00000581377 78 ntBASIC17.22■□□□□ 0.35
CFAP54Q96N23 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.22■□□□□ 0.35
CFAP54Q96N23 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.22■□□□□ 0.35
CFAP54Q96N23 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CFAP54Q96N23 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 AC116562.4-201ENST00000641316 2276 ntBASIC17.21■□□□□ 0.35
CFAP54Q96N23 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 GPS2P2-201ENST00000430745 888 ntBASIC17.21■□□□□ 0.35
CFAP54Q96N23 PTPA-220ENST00000436883 532 ntTSL 4 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms