Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
SNED1Q8TER0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.02
SNED1Q8TER0 AC239800.4-201ENST00000603712 296 ntBASIC21.39■■□□□ 1.02
SNED1Q8TER0 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.02
SNED1Q8TER0 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC21.39■■□□□ 1.02
SNED1Q8TER0 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.39■■□□□ 1.02
SNED1Q8TER0 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.39■■□□□ 1.02
SNED1Q8TER0 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
SNED1Q8TER0 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.39■■□□□ 1.01
SNED1Q8TER0 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
SNED1Q8TER0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
SNED1Q8TER0 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.39■■□□□ 1.01
SNED1Q8TER0 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SNED1Q8TER0 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SNED1Q8TER0 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC21.39■■□□□ 1.01
SNED1Q8TER0 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SNED1Q8TER0 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
SNED1Q8TER0 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SNED1Q8TER0 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 AC073592.3-201ENST00000625118 1834 ntBASIC21.38■■□□□ 1.01
SNED1Q8TER0 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SNED1Q8TER0 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.38■■□□□ 1.01
SNED1Q8TER0 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.38■■□□□ 1.01
SNED1Q8TER0 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 ACTL9-202ENST00000612068 1252 ntBASIC21.38■■□□□ 1.01
SNED1Q8TER0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 AC009093.7-201ENST00000623853 1223 ntBASIC21.38■■□□□ 1.01
SNED1Q8TER0 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SNED1Q8TER0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SNED1Q8TER0 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SNED1Q8TER0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SNED1Q8TER0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 AC097637.2-201ENST00000624096 1997 ntBASIC21.38■■□□□ 1.01
SNED1Q8TER0 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SNED1Q8TER0 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 CXCL1P1-201ENST00000502804 216 ntBASIC21.38■■□□□ 1.01
SNED1Q8TER0 STK19B-204ENST00000512515 211 ntBASIC21.38■■□□□ 1.01
SNED1Q8TER0 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 REXO1L3P-201ENST00000622202 1288 ntBASIC21.38■■□□□ 1.01
SNED1Q8TER0 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC21.38■■□□□ 1.01
SNED1Q8TER0 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 AC006116.8-202ENST00000587620 1550 ntBASIC21.37■■□□□ 1.01
SNED1Q8TER0 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 WBP2-203ENST00000433525 928 ntTSL 2 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 GREM1-201ENST00000560677 623 ntTSL 4 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SNED1Q8TER0 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SNED1Q8TER0 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SNED1Q8TER0 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SNED1Q8TER0 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SNED1Q8TER0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SNED1Q8TER0 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SNED1Q8TER0 AL590787.1-201ENST00000568856 1315 ntBASIC21.36■■□□□ 1.01
SNED1Q8TER0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SNED1Q8TER0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.36■■□□□ 1.01
SNED1Q8TER0 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms