Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
USHBP1Q8N6Y0 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 AC097637.2-201ENST00000624096 1997 ntBASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 GPR89P-201ENST00000407924 1495 ntBASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 AP006288.1-201ENST00000446065 395 ntBASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 STK19B-204ENST00000512515 211 ntBASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 AC005829.1-201ENST00000570002 483 ntBASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 AC002310.6-201ENST00000624451 1377 ntBASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
USHBP1Q8N6Y0 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 PTCHD3P3-201ENST00000403073 906 ntBASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 YBX1P5-201ENST00000509441 847 ntBASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
USHBP1Q8N6Y0 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 CD82-202ENST00000342935 967 ntTSL 5 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 METTL26-205ENST00000397666 726 ntTSL 2 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 CIPC-205ENST00000555437 566 ntTSL 3 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
USHBP1Q8N6Y0 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 METTL21AP1-201ENST00000438852 635 ntBASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 OR7E47P-204ENST00000575924 449 ntBASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 AC010507.1-201ENST00000633895 436 ntBASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 KRT18P28-201ENST00000453838 1332 ntBASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USHBP1Q8N6Y0 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 AL805961.1-202ENST00000641562 540 ntBASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC23.21■■□□□ 1.31
USHBP1Q8N6Y0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC23.21■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms