Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 Z83851.2-201ENST00000609564 659 ntBASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 SIRPAP1-201ENST00000448467 1770 ntBASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HDDC3Q8N4P3 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 AC012640.2-201ENST00000561606 901 ntBASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 AC027796.2-201ENST00000575326 344 ntBASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 AC116407.2-201ENST00000613639 860 ntBASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 AC004408.2-201ENST00000623613 2777 ntBASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 REXO1L9P-201ENST00000604264 2108 ntBASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 HTR7P1-202ENST00000624664 4411 ntBASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HDDC3Q8N4P3 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 AC004967.1-201ENST00000453589 447 ntBASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 RNA5SP416-201ENST00000516838 111 ntBASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 AC073592.5-201ENST00000624854 528 ntBASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 AL022326.1-202ENST00000641533 845 ntBASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 AC107918.4-202ENST00000641623 219 ntBASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.74■□□□□ 0.43
HDDC3Q8N4P3 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms