Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 PMPCAP1-201ENST00000508114 1576 ntBASIC21.03■□□□□ 0.96
CTR9Q6PD62 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CTR9Q6PD62 DDX43P3-201ENST00000441064 443 ntBASIC21.03■□□□□ 0.96
CTR9Q6PD62 MOK-208ENST00000519058 917 ntTSL 2 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 IRF8-202ENST00000562492 946 ntTSL 3 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
CTR9Q6PD62 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTR9Q6PD62 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CTR9Q6PD62 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTR9Q6PD62 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CTR9Q6PD62 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 AL049757.1-201ENST00000616842 1596 ntBASIC21.02■□□□□ 0.96
CTR9Q6PD62 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 RNA5SP419-201ENST00000515908 135 ntBASIC21.02■□□□□ 0.96
CTR9Q6PD62 SART3-203ENST00000546611 1184 ntBASIC21.02■□□□□ 0.96
CTR9Q6PD62 TMED1-207ENST00000591695 809 ntTSL 5 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CTR9Q6PD62 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CTR9Q6PD62 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CTR9Q6PD62 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CTR9Q6PD62 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
CTR9Q6PD62 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 NOC2LP1-202ENST00000452600 2235 ntBASIC21.01■□□□□ 0.95
CTR9Q6PD62 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 AC103564.2-201ENST00000432853 1299 ntBASIC21.01■□□□□ 0.95
CTR9Q6PD62 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 PAM16-208ENST00000573553 722 ntTSL 2 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CTR9Q6PD62 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 HLA-A-201ENST00000376802 1334 ntBASIC21.01■□□□□ 0.95
CTR9Q6PD62 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
CTR9Q6PD62 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
CTR9Q6PD62 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CTR9Q6PD62 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC21■□□□□ 0.95
CTR9Q6PD62 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms