Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
KRT39Q6A163 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
KRT39Q6A163 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
KRT39Q6A163 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.15■□□□□ 0.66
KRT39Q6A163 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
KRT39Q6A163 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
KRT39Q6A163 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
KRT39Q6A163 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.14■□□□□ 0.66
KRT39Q6A163 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.14■□□□□ 0.66
KRT39Q6A163 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
KRT39Q6A163 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.14■□□□□ 0.65
KRT39Q6A163 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 AC005104.2-201ENST00000427818 678 ntBASIC19.14■□□□□ 0.65
KRT39Q6A163 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.14■□□□□ 0.65
KRT39Q6A163 MPI-205ENST00000562606 1052 ntTSL 3 BASIC19.14■□□□□ 0.65
KRT39Q6A163 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
KRT39Q6A163 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 LETM1P2-201ENST00000597330 2178 ntBASIC19.14■□□□□ 0.65
KRT39Q6A163 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.14■□□□□ 0.65
KRT39Q6A163 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
KRT39Q6A163 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.14■□□□□ 0.65
KRT39Q6A163 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.14■□□□□ 0.65
KRT39Q6A163 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.13■□□□□ 0.65
KRT39Q6A163 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.13■□□□□ 0.65
KRT39Q6A163 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
KRT39Q6A163 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
KRT39Q6A163 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.13■□□□□ 0.65
KRT39Q6A163 LINC00265-3P-201ENST00000447588 903 ntBASIC19.13■□□□□ 0.65
KRT39Q6A163 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.13■□□□□ 0.65
KRT39Q6A163 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.13■□□□□ 0.65
KRT39Q6A163 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.13■□□□□ 0.65
KRT39Q6A163 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.13■□□□□ 0.65
KRT39Q6A163 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.13■□□□□ 0.65
KRT39Q6A163 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.13■□□□□ 0.65
KRT39Q6A163 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.13■□□□□ 0.65
KRT39Q6A163 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.13■□□□□ 0.65
KRT39Q6A163 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.13■□□□□ 0.65
KRT39Q6A163 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
KRT39Q6A163 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.13■□□□□ 0.65
KRT39Q6A163 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.13■□□□□ 0.65
KRT39Q6A163 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
KRT39Q6A163 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.12■□□□□ 0.65
KRT39Q6A163 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
KRT39Q6A163 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.12■□□□□ 0.65
KRT39Q6A163 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.12■□□□□ 0.65
KRT39Q6A163 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.12■□□□□ 0.65
KRT39Q6A163 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.12■□□□□ 0.65
KRT39Q6A163 AC009533.2-201ENST00000543664 586 ntBASIC19.12■□□□□ 0.65
KRT39Q6A163 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.12■□□□□ 0.65
KRT39Q6A163 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.12■□□□□ 0.65
KRT39Q6A163 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.12■□□□□ 0.65
KRT39Q6A163 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.12■□□□□ 0.65
KRT39Q6A163 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
KRT39Q6A163 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.12■□□□□ 0.65
KRT39Q6A163 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
KRT39Q6A163 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.11■□□□□ 0.65
KRT39Q6A163 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
KRT39Q6A163 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms