Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC88AQ3V6T2 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC88AQ3V6T2 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC88AQ3V6T2 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC88AQ3V6T2 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC21.52■■□□□ 1.03
CCDC88AQ3V6T2 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.52■■□□□ 1.03
CCDC88AQ3V6T2 FAM86GP-201ENST00000448322 971 ntBASIC21.52■■□□□ 1.03
CCDC88AQ3V6T2 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.52■■□□□ 1.03
CCDC88AQ3V6T2 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC21.52■■□□□ 1.03
CCDC88AQ3V6T2 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 AL627223.1-201ENST00000416693 442 ntBASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 AL020989.1-201ENST00000422979 469 ntBASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 AC005225.4-201ENST00000557330 545 ntBASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 LINC00628-201ENST00000628516 1289 ntBASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC88AQ3V6T2 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 AF228730.6-201ENST00000641497 218 ntBASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 AC084121.3-201ENST00000641716 218 ntBASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 AC105233.6-201ENST00000642093 218 ntBASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CCDC88AQ3V6T2 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 AC105339.1-204ENST00000636249 355 ntBASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 FUT8-AS1-201ENST00000621019 1521 ntBASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 AC002472.2-201ENST00000442739 958 ntBASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 AC067863.1-201ENST00000494933 530 ntBASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC88AQ3V6T2 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 NEK7-201ENST00000367383 586 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 NKTR-203ENST00000442970 646 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC88AQ3V6T2 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms