Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 AC080080.1-201ENST00000625121 2420 ntBASIC18.3■□□□□ 0.52
NEK3P51956 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
NEK3P51956 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NEK3P51956 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
NEK3P51956 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.29■□□□□ 0.52
NEK3P51956 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.29■□□□□ 0.52
NEK3P51956 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.29■□□□□ 0.52
NEK3P51956 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.29■□□□□ 0.52
NEK3P51956 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.29■□□□□ 0.52
NEK3P51956 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
NEK3P51956 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.29■□□□□ 0.52
NEK3P51956 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.29■□□□□ 0.52
NEK3P51956 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
NEK3P51956 AP000867.3-201ENST00000524675 377 ntBASIC18.29■□□□□ 0.52
NEK3P51956 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.29■□□□□ 0.52
NEK3P51956 AC124864.1-201ENST00000623408 392 ntBASIC18.29■□□□□ 0.52
NEK3P51956 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.29■□□□□ 0.52
NEK3P51956 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.29■□□□□ 0.52
NEK3P51956 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.29■□□□□ 0.52
NEK3P51956 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
NEK3P51956 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.28■□□□□ 0.52
NEK3P51956 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.28■□□□□ 0.52
NEK3P51956 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
NEK3P51956 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.28■□□□□ 0.52
NEK3P51956 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 RN7SL606P-201ENST00000472779 293 ntBASIC18.28■□□□□ 0.52
NEK3P51956 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.28■□□□□ 0.52
NEK3P51956 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
NEK3P51956 AC124067.4-201ENST00000519691 2379 ntBASIC18.28■□□□□ 0.52
NEK3P51956 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.28■□□□□ 0.52
NEK3P51956 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.28■□□□□ 0.52
NEK3P51956 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.28■□□□□ 0.52
NEK3P51956 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
NEK3P51956 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.28■□□□□ 0.52
NEK3P51956 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
NEK3P51956 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
NEK3P51956 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.27■□□□□ 0.52
NEK3P51956 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
NEK3P51956 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.27■□□□□ 0.52
NEK3P51956 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
NEK3P51956 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.27■□□□□ 0.52
NEK3P51956 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.27■□□□□ 0.52
NEK3P51956 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.27■□□□□ 0.52
NEK3P51956 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
NEK3P51956 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.27■□□□□ 0.52
NEK3P51956 AC012615.1-201ENST00000565797 1299 ntBASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms