Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
CUX1P39880 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC29.4■■■□□ 2.3
CUX1P39880 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
CUX1P39880 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CUX1P39880 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
CUX1P39880 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CUX1P39880 PI4KAP1-204ENST00000612579 1703 ntBASIC29.4■■■□□ 2.3
CUX1P39880 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CUX1P39880 MIR661-201ENST00000384842 89 ntBASIC29.4■■■□□ 2.3
CUX1P39880 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CUX1P39880 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC29.4■■■□□ 2.3
CUX1P39880 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC29.4■■■□□ 2.3
CUX1P39880 PNKD-204ENST00000436005 978 ntTSL 5 BASIC29.4■■■□□ 2.3
CUX1P39880 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC29.4■■■□□ 2.3
CUX1P39880 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC29.4■■■□□ 2.3
CUX1P39880 AC004449.1-201ENST00000564240 433 ntBASIC29.4■■■□□ 2.3
CUX1P39880 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC29.4■■■□□ 2.3
CUX1P39880 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC29.4■■■□□ 2.3
CUX1P39880 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CUX1P39880 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CUX1P39880 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CUX1P39880 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC29.39■■■□□ 2.3
CUX1P39880 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
CUX1P39880 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CUX1P39880 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC29.39■■■□□ 2.3
CUX1P39880 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.3
CUX1P39880 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
CUX1P39880 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC29.39■■■□□ 2.3
CUX1P39880 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CUX1P39880 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CUX1P39880 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CUX1P39880 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.3
CUX1P39880 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC29.39■■■□□ 2.3
CUX1P39880 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC29.39■■■□□ 2.3
CUX1P39880 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC29.39■■■□□ 2.3
CUX1P39880 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC29.39■■■□□ 2.3
CUX1P39880 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
CUX1P39880 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC29.39■■■□□ 2.3
CUX1P39880 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC29.39■■■□□ 2.3
CUX1P39880 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
CUX1P39880 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC29.38■■■□□ 2.29
CUX1P39880 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC29.38■■■□□ 2.29
CUX1P39880 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
CUX1P39880 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC29.38■■■□□ 2.29
CUX1P39880 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC29.38■■■□□ 2.29
CUX1P39880 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC29.38■■■□□ 2.29
CUX1P39880 AJ011932.1-201ENST00000621707 465 ntBASIC29.38■■■□□ 2.29
CUX1P39880 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC29.38■■■□□ 2.29
CUX1P39880 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CUX1P39880 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CUX1P39880 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC29.38■■■□□ 2.29
CUX1P39880 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC29.38■■■□□ 2.29
CUX1P39880 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC29.38■■■□□ 2.29
CUX1P39880 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
CUX1P39880 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CUX1P39880 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC29.37■■■□□ 2.29
CUX1P39880 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC29.37■■■□□ 2.29
CUX1P39880 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CUX1P39880 GPS2P2-201ENST00000430745 888 ntBASIC29.37■■■□□ 2.29
CUX1P39880 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC29.37■■■□□ 2.29
CUX1P39880 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC29.37■■■□□ 2.29
CUX1P39880 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC29.37■■■□□ 2.29
CUX1P39880 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
CUX1P39880 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC29.37■■■□□ 2.29
CUX1P39880 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC29.37■■■□□ 2.29
CUX1P39880 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC29.37■■■□□ 2.29
CUX1P39880 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC29.37■■■□□ 2.29
CUX1P39880 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC29.37■■■□□ 2.29
CUX1P39880 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC29.36■■■□□ 2.29
CUX1P39880 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC29.36■■■□□ 2.29
CUX1P39880 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 FAM86GP-201ENST00000448322 971 ntBASIC29.36■■■□□ 2.29
CUX1P39880 AL513480.1-201ENST00000451731 511 ntBASIC29.36■■■□□ 2.29
CUX1P39880 AC112191.1-201ENST00000523689 701 ntBASIC29.36■■■□□ 2.29
CUX1P39880 AQP6-203ENST00000551733 849 ntTSL 3 BASIC29.36■■■□□ 2.29
CUX1P39880 AC051619.7-201ENST00000568314 623 ntBASIC29.36■■■□□ 2.29
CUX1P39880 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC29.36■■■□□ 2.29
CUX1P39880 AC138761.1-201ENST00000584393 385 ntBASIC29.36■■■□□ 2.29
CUX1P39880 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC29.36■■■□□ 2.29
CUX1P39880 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC29.36■■■□□ 2.29
CUX1P39880 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CUX1P39880 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CUX1P39880 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC29.35■■■□□ 2.29
CUX1P39880 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC29.35■■■□□ 2.29
CUX1P39880 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC29.35■■■□□ 2.29
CUX1P39880 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC29.35■■■□□ 2.29
CUX1P39880 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC29.35■■■□□ 2.29
CUX1P39880 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms