Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.31
MSX2P35548 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSX2P35548 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
MSX2P35548 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
MSX2P35548 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.96■□□□□ 0.3
MSX2P35548 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.96■□□□□ 0.3
MSX2P35548 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MSX2P35548 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
MSX2P35548 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
MSX2P35548 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
MSX2P35548 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
MSX2P35548 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
MSX2P35548 HOXB1-202ENST00000577092 1414 ntBASIC16.96■□□□□ 0.3
MSX2P35548 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.96■□□□□ 0.3
MSX2P35548 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
MSX2P35548 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.95■□□□□ 0.3
MSX2P35548 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
MSX2P35548 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.95■□□□□ 0.3
MSX2P35548 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.95■□□□□ 0.3
MSX2P35548 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
MSX2P35548 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.95■□□□□ 0.3
MSX2P35548 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
MSX2P35548 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 MFAP1P1-201ENST00000442257 1255 ntBASIC16.95■□□□□ 0.3
MSX2P35548 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.95■□□□□ 0.3
MSX2P35548 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.95■□□□□ 0.3
MSX2P35548 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.95■□□□□ 0.3
MSX2P35548 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.95■□□□□ 0.3
MSX2P35548 AC009949.1-201ENST00000623048 1830 ntBASIC16.95■□□□□ 0.3
MSX2P35548 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
MSX2P35548 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.95■□□□□ 0.3
MSX2P35548 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.95■□□□□ 0.3
MSX2P35548 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
MSX2P35548 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSX2P35548 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.94■□□□□ 0.3
MSX2P35548 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.94■□□□□ 0.3
MSX2P35548 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 AC005915.1-201ENST00000624912 2018 ntBASIC16.94■□□□□ 0.3
MSX2P35548 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.94■□□□□ 0.3
MSX2P35548 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MSX2P35548 AC096733.2-201ENST00000609937 1394 ntBASIC16.94■□□□□ 0.3
MSX2P35548 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 AC132872.4-202ENST00000622924 2756 ntBASIC16.94■□□□□ 0.3
MSX2P35548 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
MSX2P35548 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.94■□□□□ 0.3
MSX2P35548 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.94■□□□□ 0.3
MSX2P35548 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
MSX2P35548 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MSX2P35548 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MSX2P35548 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MSX2P35548 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
MSX2P35548 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MSX2P35548 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.94■□□□□ 0.3
MSX2P35548 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.94■□□□□ 0.3
MSX2P35548 LINC00554-201ENST00000564841 3011 ntBASIC16.94■□□□□ 0.3
MSX2P35548 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSX2P35548 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.93■□□□□ 0.3
MSX2P35548 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
MSX2P35548 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 FSCN1P1-201ENST00000568912 1481 ntBASIC16.93■□□□□ 0.3
MSX2P35548 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.93■□□□□ 0.3
MSX2P35548 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.93■□□□□ 0.3
MSX2P35548 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.93■□□□□ 0.3
MSX2P35548 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC16.93■□□□□ 0.3
MSX2P35548 AL355802.2-201ENST00000402069 882 ntBASIC16.93■□□□□ 0.3
MSX2P35548 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
MSX2P35548 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.93■□□□□ 0.3
MSX2P35548 AC073195.1-201ENST00000607241 877 ntBASIC16.93■□□□□ 0.3
MSX2P35548 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSX2P35548 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
MSX2P35548 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms