Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.37■□□□□ 0.37
SHMT2P34897 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
SHMT2P34897 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.37■□□□□ 0.37
SHMT2P34897 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.37■□□□□ 0.37
SHMT2P34897 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 PRELID1P1-202ENST00000567272 903 ntBASIC17.37■□□□□ 0.37
SHMT2P34897 CLEC4GP1-201ENST00000596555 870 ntBASIC17.37■□□□□ 0.37
SHMT2P34897 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.37■□□□□ 0.37
SHMT2P34897 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.37■□□□□ 0.37
SHMT2P34897 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.37■□□□□ 0.37
SHMT2P34897 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.37■□□□□ 0.37
SHMT2P34897 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SHMT2P34897 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.37■□□□□ 0.37
SHMT2P34897 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
SHMT2P34897 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.37■□□□□ 0.37
SHMT2P34897 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SHMT2P34897 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.36■□□□□ 0.37
SHMT2P34897 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SHMT2P34897 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SHMT2P34897 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.36■□□□□ 0.37
SHMT2P34897 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.36■□□□□ 0.37
SHMT2P34897 MINOS1P3-201ENST00000457048 203 ntBASIC17.36■□□□□ 0.37
SHMT2P34897 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.36■□□□□ 0.37
SHMT2P34897 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.36■□□□□ 0.37
SHMT2P34897 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.36■□□□□ 0.37
SHMT2P34897 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.36■□□□□ 0.37
SHMT2P34897 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.36■□□□□ 0.37
SHMT2P34897 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.36■□□□□ 0.37
SHMT2P34897 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.36■□□□□ 0.37
SHMT2P34897 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SHMT2P34897 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.36■□□□□ 0.37
SHMT2P34897 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.36■□□□□ 0.37
SHMT2P34897 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SHMT2P34897 FLJ13224-201ENST00000313737 1514 ntBASIC17.36■□□□□ 0.37
SHMT2P34897 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SHMT2P34897 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
SHMT2P34897 AC080080.1-201ENST00000625121 2420 ntBASIC17.36■□□□□ 0.37
SHMT2P34897 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.36■□□□□ 0.37
SHMT2P34897 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHMT2P34897 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
SHMT2P34897 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.35■□□□□ 0.37
SHMT2P34897 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
SHMT2P34897 NUS1P1-201ENST00000446295 882 ntBASIC17.35■□□□□ 0.37
SHMT2P34897 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SHMT2P34897 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.35■□□□□ 0.37
SHMT2P34897 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.35■□□□□ 0.37
SHMT2P34897 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.35■□□□□ 0.37
SHMT2P34897 AP005901.3-202ENST00000581653 237 ntBASIC17.35■□□□□ 0.37
SHMT2P34897 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.35■□□□□ 0.37
SHMT2P34897 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
SHMT2P34897 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SHMT2P34897 NSUN5P1-202ENST00000421140 1535 ntBASIC17.35■□□□□ 0.37
SHMT2P34897 NSUN5P2-203ENST00000457352 1529 ntBASIC17.35■□□□□ 0.37
SHMT2P34897 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.35■□□□□ 0.37
SHMT2P34897 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SHMT2P34897 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SHMT2P34897 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHMT2P34897 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SHMT2P34897 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms