Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.13■□□□□ 0.49
COL9A1P20849 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.13■□□□□ 0.49
COL9A1P20849 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.13■□□□□ 0.49
COL9A1P20849 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.13■□□□□ 0.49
COL9A1P20849 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.13■□□□□ 0.49
COL9A1P20849 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.13■□□□□ 0.49
COL9A1P20849 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.13■□□□□ 0.49
COL9A1P20849 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC18.13■□□□□ 0.49
COL9A1P20849 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.13■□□□□ 0.49
COL9A1P20849 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.13■□□□□ 0.49
COL9A1P20849 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.13■□□□□ 0.49
COL9A1P20849 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.13■□□□□ 0.49
COL9A1P20849 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.13■□□□□ 0.49
COL9A1P20849 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL9A1P20849 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.12■□□□□ 0.49
COL9A1P20849 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.12■□□□□ 0.49
COL9A1P20849 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.12■□□□□ 0.49
COL9A1P20849 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.12■□□□□ 0.49
COL9A1P20849 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.12■□□□□ 0.49
COL9A1P20849 BX005266.1-201ENST00000473402 457 ntBASIC18.12■□□□□ 0.49
COL9A1P20849 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.12■□□□□ 0.49
COL9A1P20849 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL9A1P20849 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.12■□□□□ 0.49
COL9A1P20849 RN7SL275P-201ENST00000582762 335 ntBASIC18.12■□□□□ 0.49
COL9A1P20849 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.12■□□□□ 0.49
COL9A1P20849 SPTSSB-204ENST00000617024 1292 ntBASIC18.12■□□□□ 0.49
COL9A1P20849 BCAR1-209ENST00000546196 1340 ntBASIC18.12■□□□□ 0.49
COL9A1P20849 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.12■□□□□ 0.49
COL9A1P20849 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL9A1P20849 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL9A1P20849 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.11■□□□□ 0.49
COL9A1P20849 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL9A1P20849 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL9A1P20849 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.11■□□□□ 0.49
COL9A1P20849 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL9A1P20849 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.11■□□□□ 0.49
COL9A1P20849 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC18.11■□□□□ 0.49
COL9A1P20849 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
COL9A1P20849 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.11■□□□□ 0.49
COL9A1P20849 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
COL9A1P20849 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.11■□□□□ 0.49
COL9A1P20849 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.11■□□□□ 0.49
COL9A1P20849 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.11■□□□□ 0.49
COL9A1P20849 AL390754.1-201ENST00000619088 582 ntBASIC18.11■□□□□ 0.49
COL9A1P20849 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.11■□□□□ 0.49
COL9A1P20849 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL9A1P20849 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL9A1P20849 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.11■□□□□ 0.49
COL9A1P20849 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL9A1P20849 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.11■□□□□ 0.49
COL9A1P20849 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.11■□□□□ 0.49
COL9A1P20849 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL9A1P20849 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL9A1P20849 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
COL9A1P20849 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL9A1P20849 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL9A1P20849 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL9A1P20849 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL9A1P20849 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL9A1P20849 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL9A1P20849 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL9A1P20849 AC132938.6-201ENST00000623828 1655 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.1■□□□□ 0.49
COL9A1P20849 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.1■□□□□ 0.49
COL9A1P20849 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL9A1P20849 TUBB3P1-201ENST00000405796 1332 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 AC092933.1-201ENST00000393644 945 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.1■□□□□ 0.49
COL9A1P20849 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.1■□□□□ 0.49
COL9A1P20849 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.1■□□□□ 0.49
COL9A1P20849 AC074386.1-202ENST00000463561 864 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 AC108073.2-201ENST00000464002 357 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL9A1P20849 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.1■□□□□ 0.49
COL9A1P20849 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.1■□□□□ 0.49
COL9A1P20849 IGHV3-42-201ENST00000520410 361 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 KRT19P2-202ENST00000557173 1012 ntBASIC18.1■□□□□ 0.49
COL9A1P20849 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms