Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HMGA1P17096 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGA1P17096 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGA1P17096 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.31■□□□□ 0.52
HMGA1P17096 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
HMGA1P17096 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.31■□□□□ 0.52
HMGA1P17096 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGA1P17096 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGA1P17096 AC139530.3-201ENST00000620344 690 ntBASIC18.31■□□□□ 0.52
HMGA1P17096 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGA1P17096 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HMGA1P17096 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
HMGA1P17096 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGA1P17096 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGA1P17096 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
HMGA1P17096 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 REXO1L11P-201ENST00000620964 1927 ntBASIC18.31■□□□□ 0.52
HMGA1P17096 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGA1P17096 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.31■□□□□ 0.52
HMGA1P17096 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGA1P17096 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.31■□□□□ 0.52
HMGA1P17096 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGA1P17096 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGA1P17096 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGA1P17096 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGA1P17096 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGA1P17096 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGA1P17096 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HMGA1P17096 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.3■□□□□ 0.52
HMGA1P17096 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGA1P17096 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGA1P17096 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.3■□□□□ 0.52
HMGA1P17096 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.3■□□□□ 0.52
HMGA1P17096 AC092865.5-201ENST00000545435 363 ntBASIC18.3■□□□□ 0.52
HMGA1P17096 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.3■□□□□ 0.52
HMGA1P17096 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.3■□□□□ 0.52
HMGA1P17096 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HMGA1P17096 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGA1P17096 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HMGA1P17096 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGA1P17096 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.29■□□□□ 0.52
HMGA1P17096 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
HMGA1P17096 MYCLP1-201ENST00000372451 1075 ntBASIC18.29■□□□□ 0.52
HMGA1P17096 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HMGA1P17096 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HMGA1P17096 BX842568.4-201ENST00000421222 227 ntBASIC18.29■□□□□ 0.52
HMGA1P17096 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGA1P17096 AC007967.2-201ENST00000432613 625 ntBASIC18.29■□□□□ 0.52
HMGA1P17096 AC108751.1-201ENST00000490852 363 ntBASIC18.29■□□□□ 0.52
HMGA1P17096 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGA1P17096 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.29■□□□□ 0.52
HMGA1P17096 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
HMGA1P17096 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.29■□□□□ 0.52
HMGA1P17096 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms