Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.46■□□□□ 0.71
COL6A1P12109 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.46■□□□□ 0.71
COL6A1P12109 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A1P12109 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A1P12109 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A1P12109 AC005082.1-201ENST00000413042 2259 ntBASIC19.46■□□□□ 0.71
COL6A1P12109 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.46■□□□□ 0.71
COL6A1P12109 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.46■□□□□ 0.71
COL6A1P12109 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.46■□□□□ 0.71
COL6A1P12109 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A1P12109 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
COL6A1P12109 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
COL6A1P12109 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
COL6A1P12109 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL6A1P12109 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL6A1P12109 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.45■□□□□ 0.7
COL6A1P12109 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
COL6A1P12109 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A1P12109 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
COL6A1P12109 GK-202ENST00000378941 458 ntTSL 3 BASIC19.45■□□□□ 0.7
COL6A1P12109 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 AC067863.1-201ENST00000494933 530 ntBASIC19.45■□□□□ 0.7
COL6A1P12109 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.45■□□□□ 0.7
COL6A1P12109 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A1P12109 AC087641.1-201ENST00000557561 1021 ntBASIC19.45■□□□□ 0.7
COL6A1P12109 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A1P12109 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.45■□□□□ 0.7
COL6A1P12109 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.45■□□□□ 0.7
COL6A1P12109 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
COL6A1P12109 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.45■□□□□ 0.7
COL6A1P12109 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.45■□□□□ 0.7
COL6A1P12109 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL6A1P12109 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A1P12109 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.44■□□□□ 0.7
COL6A1P12109 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 CXCL1P1-201ENST00000502804 216 ntBASIC19.44■□□□□ 0.7
COL6A1P12109 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.44■□□□□ 0.7
COL6A1P12109 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
COL6A1P12109 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.44■□□□□ 0.7
COL6A1P12109 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC19.44■□□□□ 0.7
COL6A1P12109 AC093214.1-201ENST00000511688 1107 ntBASIC19.44■□□□□ 0.7
COL6A1P12109 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A1P12109 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.44■□□□□ 0.7
COL6A1P12109 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.44■□□□□ 0.7
COL6A1P12109 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 AC019129.2-201ENST00000609837 1235 ntBASIC19.44■□□□□ 0.7
COL6A1P12109 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.44■□□□□ 0.7
COL6A1P12109 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
COL6A1P12109 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A1P12109 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A1P12109 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A1P12109 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A1P12109 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.43■□□□□ 0.7
COL6A1P12109 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A1P12109 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 AL627223.1-201ENST00000416693 442 ntBASIC19.43■□□□□ 0.7
COL6A1P12109 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A1P12109 INGX-202ENST00000489074 768 ntBASIC19.43■□□□□ 0.7
COL6A1P12109 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.43■□□□□ 0.7
COL6A1P12109 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.43■□□□□ 0.7
COL6A1P12109 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A1P12109 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
COL6A1P12109 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A1P12109 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
COL6A1P12109 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms