Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.52■■□□□ 1.04
COL4A1P02462 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A1P02462 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A1P02462 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
COL4A1P02462 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC21.52■■□□□ 1.04
COL4A1P02462 RHOQP3-201ENST00000437982 621 ntBASIC21.52■■□□□ 1.04
COL4A1P02462 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC21.52■■□□□ 1.04
COL4A1P02462 AC002558.1-201ENST00000488906 803 ntBASIC21.52■■□□□ 1.04
COL4A1P02462 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC21.52■■□□□ 1.04
COL4A1P02462 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC21.52■■□□□ 1.04
COL4A1P02462 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC21.52■■□□□ 1.04
COL4A1P02462 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL4A1P02462 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
COL4A1P02462 AC087289.5-201ENST00000586076 3175 ntBASIC21.52■■□□□ 1.04
COL4A1P02462 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL4A1P02462 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
COL4A1P02462 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.52■■□□□ 1.03
COL4A1P02462 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.52■■□□□ 1.03
COL4A1P02462 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
COL4A1P02462 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC21.51■■□□□ 1.03
COL4A1P02462 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.51■■□□□ 1.03
COL4A1P02462 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 ELL2P1-201ENST00000413990 1906 ntBASIC21.51■■□□□ 1.03
COL4A1P02462 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
COL4A1P02462 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
COL4A1P02462 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC21.51■■□□□ 1.03
COL4A1P02462 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC21.51■■□□□ 1.03
COL4A1P02462 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC21.51■■□□□ 1.03
COL4A1P02462 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC21.51■■□□□ 1.03
COL4A1P02462 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC21.51■■□□□ 1.03
COL4A1P02462 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC21.51■■□□□ 1.03
COL4A1P02462 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.51■■□□□ 1.03
COL4A1P02462 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 AC004408.2-201ENST00000623613 2777 ntBASIC21.51■■□□□ 1.03
COL4A1P02462 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
COL4A1P02462 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC21.51■■□□□ 1.03
COL4A1P02462 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL4A1P02462 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 AP002414.1-201ENST00000391405 1147 ntBASIC21.5■■□□□ 1.03
COL4A1P02462 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC21.5■■□□□ 1.03
COL4A1P02462 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
COL4A1P02462 AC005829.1-201ENST00000570002 483 ntBASIC21.5■■□□□ 1.03
COL4A1P02462 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 C20orf181-201ENST00000623918 480 ntBASIC21.5■■□□□ 1.03
COL4A1P02462 AC004877.2-201ENST00000623941 599 ntBASIC21.5■■□□□ 1.03
COL4A1P02462 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 AC090164.3-201ENST00000610780 2143 ntBASIC21.5■■□□□ 1.03
COL4A1P02462 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 AC092919.2-201ENST00000623631 1645 ntBASIC21.5■■□□□ 1.03
COL4A1P02462 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC21.5■■□□□ 1.03
COL4A1P02462 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.5■■□□□ 1.03
COL4A1P02462 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 ACTG1P4-201ENST00000425123 1122 ntBASIC21.5■■□□□ 1.03
COL4A1P02462 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 PRSS29P-201ENST00000440800 595 ntBASIC21.5■■□□□ 1.03
COL4A1P02462 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL4A1P02462 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.5■■□□□ 1.03
COL4A1P02462 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC21.5■■□□□ 1.03
COL4A1P02462 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.5■■□□□ 1.03
COL4A1P02462 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A1P02462 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.49■■□□□ 1.03
COL4A1P02462 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A1P02462 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A1P02462 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL4A1P02462 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.49■■□□□ 1.03
COL4A1P02462 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A1P02462 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.49■■□□□ 1.03
COL4A1P02462 RFPL4AP1-201ENST00000530883 850 ntBASIC21.49■■□□□ 1.03
COL4A1P02462 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC21.49■■□□□ 1.03
COL4A1P02462 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A1P02462 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A1P02462 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A1P02462 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL4A1P02462 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21.48■■□□□ 1.03
COL4A1P02462 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms