Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
LDB3O75112 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.69■□□□□ 0.26
LDB3O75112 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.69■□□□□ 0.26
LDB3O75112 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.69■□□□□ 0.26
LDB3O75112 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.69■□□□□ 0.26
LDB3O75112 AC007967.3-201ENST00000434308 558 ntBASIC16.69■□□□□ 0.26
LDB3O75112 DDX43P3-201ENST00000441064 443 ntBASIC16.69■□□□□ 0.26
LDB3O75112 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.69■□□□□ 0.26
LDB3O75112 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 AC099336.1-202ENST00000602961 463 ntBASIC16.69■□□□□ 0.26
LDB3O75112 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.69■□□□□ 0.26
LDB3O75112 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.69■□□□□ 0.26
LDB3O75112 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.69■□□□□ 0.26
LDB3O75112 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.69■□□□□ 0.26
LDB3O75112 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.69■□□□□ 0.26
LDB3O75112 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.69■□□□□ 0.26
LDB3O75112 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.69■□□□□ 0.26
LDB3O75112 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
LDB3O75112 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
LDB3O75112 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
LDB3O75112 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB3O75112 LETM1P2-201ENST00000597330 2178 ntBASIC16.68■□□□□ 0.26
LDB3O75112 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB3O75112 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 AC026471.1-201ENST00000564629 3026 ntBASIC16.68■□□□□ 0.26
LDB3O75112 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB3O75112 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LDB3O75112 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LDB3O75112 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
LDB3O75112 GNAS-203ENST00000306120 1878 ntBASIC16.68■□□□□ 0.26
LDB3O75112 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.68■□□□□ 0.26
LDB3O75112 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.68■□□□□ 0.26
LDB3O75112 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
LDB3O75112 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 KRT18P56-201ENST00000507275 550 ntBASIC16.68■□□□□ 0.26
LDB3O75112 AC096582.2-201ENST00000510860 516 ntBASIC16.68■□□□□ 0.26
LDB3O75112 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB3O75112 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 MIR3652-201ENST00000579335 131 ntBASIC16.68■□□□□ 0.26
LDB3O75112 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.68■□□□□ 0.26
LDB3O75112 AC138894.3-201ENST00000603787 634 ntBASIC16.68■□□□□ 0.26
LDB3O75112 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.68■□□□□ 0.26
LDB3O75112 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
LDB3O75112 AL355312.1-201ENST00000407115 2176 ntBASIC16.68■□□□□ 0.26
LDB3O75112 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
LDB3O75112 AC097374.2-201ENST00000618617 1306 ntBASIC16.68■□□□□ 0.26
LDB3O75112 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
LDB3O75112 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
LDB3O75112 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.68■□□□□ 0.26
LDB3O75112 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.67■□□□□ 0.26
LDB3O75112 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.67■□□□□ 0.26
LDB3O75112 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
LDB3O75112 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.67■□□□□ 0.26
LDB3O75112 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.67■□□□□ 0.26
LDB3O75112 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.67■□□□□ 0.26
LDB3O75112 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.67■□□□□ 0.26
LDB3O75112 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.67■□□□□ 0.26
LDB3O75112 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LDB3O75112 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.67■□□□□ 0.26
LDB3O75112 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.67■□□□□ 0.26
LDB3O75112 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LDB3O75112 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
LDB3O75112 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.67■□□□□ 0.26
LDB3O75112 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.67■□□□□ 0.26
LDB3O75112 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.67■□□□□ 0.26
LDB3O75112 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms