Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
CBX4O00257 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.14■□□□□ 0.49
CBX4O00257 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CBX4O00257 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CBX4O00257 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.14■□□□□ 0.49
CBX4O00257 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.14■□□□□ 0.49
CBX4O00257 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.14■□□□□ 0.49
CBX4O00257 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CBX4O00257 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CBX4O00257 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.13■□□□□ 0.49
CBX4O00257 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
CBX4O00257 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.13■□□□□ 0.49
CBX4O00257 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CBX4O00257 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 AL022342.1-201ENST00000400363 863 ntBASIC18.13■□□□□ 0.49
CBX4O00257 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
CBX4O00257 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.13■□□□□ 0.49
CBX4O00257 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.13■□□□□ 0.49
CBX4O00257 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.13■□□□□ 0.49
CBX4O00257 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CBX4O00257 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.13■□□□□ 0.49
CBX4O00257 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 INTS4P1-201ENST00000438455 1935 ntBASIC18.13■□□□□ 0.49
CBX4O00257 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.13■□□□□ 0.49
CBX4O00257 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CBX4O00257 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.13■□□□□ 0.49
CBX4O00257 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.12■□□□□ 0.49
CBX4O00257 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CBX4O00257 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.12■□□□□ 0.49
CBX4O00257 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
CBX4O00257 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CBX4O00257 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.12■□□□□ 0.49
CBX4O00257 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 FAM220CP-201ENST00000395253 831 ntBASIC18.12■□□□□ 0.49
CBX4O00257 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.12■□□□□ 0.49
CBX4O00257 AC079776.4-201ENST00000511039 504 ntBASIC18.12■□□□□ 0.49
CBX4O00257 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.12■□□□□ 0.49
CBX4O00257 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.12■□□□□ 0.49
CBX4O00257 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.12■□□□□ 0.49
CBX4O00257 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CBX4O00257 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CBX4O00257 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.12■□□□□ 0.49
CBX4O00257 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CBX4O00257 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CBX4O00257 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.12■□□□□ 0.49
CBX4O00257 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CBX4O00257 AC018470.1-201ENST00000624790 3129 ntBASIC18.12■□□□□ 0.49
CBX4O00257 OR6D1P-202ENST00000641007 5290 ntBASIC18.11■□□□□ 0.49
CBX4O00257 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.11■□□□□ 0.49
CBX4O00257 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CBX4O00257 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CBX4O00257 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.11■□□□□ 0.49
CBX4O00257 AC132008.2-207ENST00000454517 770 ntBASIC18.11■□□□□ 0.49
CBX4O00257 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.11■□□□□ 0.49
CBX4O00257 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CBX4O00257 AL160237.2-201ENST00000556165 472 ntBASIC18.11■□□□□ 0.49
CBX4O00257 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.11■□□□□ 0.49
CBX4O00257 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms